Wall clock time and date at job start Mon Mar 30 2020 03:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.34327 * 126.44255 * 90.02307 * 10 9 7 12 12 N 1.34479 * 107.66512 * 180.02562 * 11 10 9 13 13 C 1.30257 * 108.70626 * 359.97438 * 12 11 10 14 14 C 1.50696 * 125.62311 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.33286 * 197.22774 * 14 13 12 16 16 C 1.54484 * 110.37127 * 74.97765 * 14 13 12 17 17 C 1.54504 * 104.06253 * 217.19307 * 16 14 13 18 18 C 1.54476 * 104.06585 * 359.97438 * 17 16 14 19 19 O 1.44427 * 104.80330 * 23.98273 * 18 17 16 20 20 O 1.33970 * 108.75405 * 359.73404 * 13 12 11 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07995 * 126.16654 * 0.02562 * 11 10 9 25 25 H 1.09000 * 110.51049 * 335.83513 * 16 14 13 26 26 H 1.08995 * 110.50976 * 98.40739 * 16 14 13 27 27 H 1.09003 * 110.51346 * 118.64670 * 17 16 14 28 28 H 1.09004 * 110.50746 * 241.21820 * 17 16 14 29 29 H 1.09001 * 110.37733 * 142.81079 * 18 17 16 30 30 H 1.08996 * 110.37689 * 265.03930 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7484 -4.2514 1.0811 12 7 3.5763 -5.2187 0.6483 13 6 3.5755 -5.2173 -0.6543 14 6 4.3710 -6.1474 -1.5336 15 1 4.4310 -5.7514 -2.5473 16 6 3.7340 -7.5547 -1.5428 17 6 4.9444 -8.5144 -1.5748 18 6 6.1695 -7.5735 -1.5817 19 8 5.6943 -6.3446 -0.9902 20 8 2.7459 -4.2568 -1.0835 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.5380 -4.0066 2.1117 25 1 3.1447 -7.7132 -0.6396 26 1 3.1148 -7.6878 -2.4299 27 1 4.9535 -9.1474 -0.6874 28 1 4.9242 -9.1246 -2.4778 29 1 6.9760 -7.9960 -0.9824 30 1 6.5081 -7.3989 -2.6029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260135329.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:07 Heat of formation + Delta-G solvation = -55.029352 kcal Electronic energy + Delta-G solvation = -14779.301245 eV Core-core repulsion = 12154.135649 eV Total energy + Delta-G solvation = -2625.165596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.28178 -40.33925 -35.70913 -35.64568 -33.38917 -32.92131 -30.98476 -28.11796 -25.48070 -24.53819 -22.78815 -22.40351 -21.72148 -18.82855 -18.45611 -17.50578 -17.13154 -16.87384 -16.46389 -16.13148 -15.08735 -14.70673 -14.51224 -14.38743 -13.99063 -13.50810 -13.02082 -12.77267 -12.72804 -12.67379 -12.29840 -12.20886 -12.14299 -11.72965 -11.60923 -11.46389 -10.90642 -10.69303 -9.58858 -8.30981 -6.45906 0.49171 1.39481 1.39918 1.51412 1.53597 1.70730 2.36758 2.96047 3.02039 3.12862 3.59927 3.83435 3.91685 4.13589 4.21013 4.28404 4.34137 4.61931 4.71742 4.83205 4.89481 4.93833 5.05568 5.12105 5.16084 5.35139 5.43066 5.59218 5.75570 5.94703 6.61025 6.76386 7.23424 8.78434 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.056145 B = 0.005697 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.589945 B = 4913.307978 C = 5108.625599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.102 3.898 10 C 0.000 4.000 11 C -0.078 4.078 12 N -0.475 5.475 13 C 0.150 3.850 14 C 0.177 3.823 15 H 0.114 0.886 16 C -0.140 4.140 17 C -0.141 4.141 18 C 0.035 3.965 19 O -0.387 6.387 20 O -0.212 6.212 21 H 0.272 0.728 22 H 0.051 0.949 23 H 0.021 0.979 24 H 0.194 0.806 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 -14.868 -5.066 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.065 3.935 10 C -0.053 4.053 11 C -0.216 4.216 12 N -0.204 5.204 13 C -0.057 4.057 14 C 0.118 3.882 15 H 0.132 0.868 16 C -0.178 4.178 17 C -0.179 4.179 18 C -0.040 4.040 19 O -0.306 6.306 20 O -0.099 6.099 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.211 0.789 25 H 0.082 0.918 26 H 0.128 0.872 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.734 -15.038 -4.588 17.986 hybrid contribution -0.424 1.490 -0.190 1.560 sum 8.310 -13.549 -4.778 16.597 Atomic orbital electron populations 1.70025 1.07423 1.28616 1.49823 1.25822 0.95843 1.02873 0.93780 0.85372 0.78492 0.78071 0.78701 1.19579 1.19701 1.19427 1.21217 0.93023 0.90870 1.53249 0.93177 1.17745 0.90677 0.86542 0.98587 1.24476 1.00126 0.96731 0.83947 1.23213 1.00334 0.96962 1.01055 1.70270 1.19073 1.21171 1.09931 1.26357 0.95953 0.92702 0.90665 1.21159 0.81983 0.92373 0.92668 0.86832 1.23005 0.99600 0.90895 1.04348 1.22929 0.92079 0.97859 1.05019 1.23787 0.97721 0.82602 0.99924 1.89221 1.28255 1.44126 1.69009 1.84344 1.48302 1.39715 1.37570 0.91936 0.93079 0.96094 0.78879 0.91793 0.87204 0.90118 0.86955 0.87352 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -31.29 9.09 25.60 0.23 -31.06 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.10 5.42 5.53 29.10 0.16 5.59 16 10 C 0.00 0.01 6.58 24.79 0.16 0.17 16 11 C -0.08 -3.48 11.80 83.39 0.98 -2.50 16 12 N -0.47 -20.48 11.28 -303.83 -3.43 -23.90 16 13 C 0.15 6.00 7.19 88.34 0.63 6.63 16 14 C 0.18 5.08 3.85 30.35 0.12 5.20 16 15 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 16 C -0.14 -2.94 6.62 31.61 0.21 -2.74 16 17 C -0.14 -2.06 7.09 31.61 0.22 -1.83 16 18 C 0.04 0.61 7.63 72.48 0.55 1.17 16 19 O -0.39 -11.50 11.32 -148.98 -1.69 -13.19 16 20 O -0.21 -9.63 10.78 -3.75 -0.04 -9.67 16 21 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 23 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.19 7.69 8.06 -2.91 -0.02 7.66 16 25 H 0.06 1.61 7.86 -2.39 -0.02 1.60 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.45 265.46 2.03 -66.42 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.13 Total: 5.68 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.74 Total: -17.96 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.14 Total: -77.01 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.73 Total: -22.86 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.45 2.03 -66.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135329.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.387 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds