Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48499 * 109.47210 * 239.99764 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47221 * 120.00160 * 3 2 1 7 7 C 1.37880 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99784 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47253 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.54334 * 52.14948 * 10 9 7 12 12 C 1.54228 * 110.60601 * 175.00121 * 10 9 7 13 13 C 1.51317 * 103.55428 * 118.51823 * 12 10 9 14 14 O 1.21232 * 125.39012 * 179.97438 * 13 12 10 15 15 N 1.33875 * 109.20833 * 359.97438 * 13 12 10 16 16 C 1.46497 * 122.75948 * 179.97438 * 15 13 12 17 17 C 1.53000 * 117.50183 * 14.95672 * 16 15 13 18 18 C 1.52995 * 117.50443 * 306.29602 * 16 15 13 19 19 C 1.33874 * 114.47251 * 0.02562 * 15 13 12 20 20 O 1.21228 * 125.39120 * 180.02562 * 19 15 13 21 21 H 0.97008 * 119.99725 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47428 * 59.99889 * 9 7 2 23 23 H 1.09006 * 109.47155 * 299.99817 * 9 7 2 24 24 H 1.09000 * 110.60171 * 237.03089 * 12 10 9 25 25 H 1.08993 * 110.60992 * 359.97438 * 12 10 9 26 26 H 1.09006 * 115.54658 * 160.62261 * 16 15 13 27 27 H 1.09004 * 117.49551 * 0.02562 * 17 16 15 28 28 H 1.09003 * 117.49850 * 145.01347 * 17 16 15 29 29 H 1.09003 * 117.50396 * 214.98270 * 18 16 15 30 30 H 1.09002 * 117.49452 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9697 -3.5459 0.8065 12 6 1.5046 -5.0092 0.1263 13 6 1.8630 -5.7318 -1.1539 14 8 1.4852 -6.8414 -1.4632 15 7 2.6635 -4.9517 -1.8907 16 6 3.1903 -5.3631 -3.1943 17 6 2.5352 -6.5678 -3.8728 18 6 3.9346 -6.6979 -3.2663 19 6 2.9437 -3.7651 -1.3377 20 8 3.6453 -2.9086 -1.8313 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 1.8628 -5.5643 0.9933 25 1 0.4281 -4.8508 0.1894 26 1 3.5431 -4.5549 -3.8351 27 1 1.7119 -7.0540 -3.3494 28 1 2.4574 -6.5524 -4.9600 29 1 4.7769 -6.7681 -3.9546 30 1 4.0326 -7.2697 -2.3436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260146606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -40.470780 kcal Electronic energy + Delta-G solvation = -15314.500920 eV Core-core repulsion = 12689.966631 eV Total energy + Delta-G solvation = -2624.534289 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.61126 -38.22497 -36.70840 -35.36584 -33.47240 -31.68299 -28.07836 -25.00288 -23.33785 -22.74902 -22.35029 -20.48196 -19.01864 -17.03599 -16.54448 -16.05618 -15.79276 -14.79490 -14.48054 -14.26939 -13.73634 -13.51025 -13.43128 -13.00693 -12.25079 -11.94730 -11.65552 -11.42284 -11.27981 -10.88391 -10.65343 -10.58627 -10.52963 -9.90442 -9.73125 -9.27757 -9.11627 -9.01633 -8.39520 -6.04899 -4.06408 1.95153 2.79304 3.07289 3.35502 3.38909 3.44128 3.91615 4.44884 4.45084 4.74603 4.83052 4.96586 4.99696 5.08151 5.33058 5.42540 5.53561 5.63735 5.86306 5.95411 6.09063 6.20287 6.31507 6.47273 7.21955 7.42142 7.44553 7.71634 7.93423 8.26101 8.30969 8.98935 9.58433 11.06432 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044020 B = 0.007662 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.919467 B = 3653.567113 C = 3998.952856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.039 3.961 10 C -0.114 4.114 11 H 0.114 0.886 12 C -0.158 4.158 13 C 0.532 3.468 14 O -0.502 6.502 15 N -0.551 5.551 16 C 0.052 3.948 17 C -0.186 4.186 18 C -0.181 4.181 19 C 0.536 3.464 20 O -0.462 6.462 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.038 0.962 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -11.271 -2.605 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.135 4.135 11 H 0.132 0.868 12 C -0.198 4.198 13 C 0.323 3.677 14 O -0.377 6.377 15 N -0.294 5.294 16 C -0.051 4.051 17 C -0.223 4.223 18 C -0.220 4.220 19 C 0.325 3.675 20 O -0.330 6.330 21 H 0.071 0.929 22 H 0.039 0.961 23 H 0.056 0.944 24 H 0.130 0.870 25 H 0.139 0.861 26 H 0.158 0.842 27 H 0.147 0.853 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.431 -11.225 -3.056 12.449 hybrid contribution 0.465 0.965 -0.168 1.084 sum 4.896 -10.260 -3.223 11.816 Atomic orbital electron populations 1.69938 1.06060 1.26946 1.50797 1.24965 0.94818 0.99360 0.95097 0.86600 0.79545 0.82775 0.78816 1.20117 1.21383 1.20150 1.21160 0.93531 0.90232 1.50686 0.91739 1.19109 0.92449 0.89749 0.98516 1.22339 1.00194 0.96645 0.94308 0.86815 1.22703 1.04870 0.96530 0.95691 1.21019 0.75826 0.84455 0.86436 1.90597 1.53861 1.18382 1.74811 1.46353 1.45346 1.18886 1.18808 1.21887 1.03969 0.92914 0.86307 1.23713 0.98067 1.00083 1.00430 1.23281 0.95943 0.99239 1.03510 1.21144 0.79423 0.79054 0.87861 1.90708 1.34996 1.40241 1.67069 0.92856 0.96058 0.94360 0.86994 0.86134 0.84245 0.85319 0.88279 0.87937 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.14 8.38 -34.44 -0.29 -14.43 16 8 H 0.06 1.77 7.31 -52.49 -0.38 1.39 16 9 C 0.04 0.92 4.28 -27.88 -0.12 0.80 16 10 C -0.11 -2.09 3.03 -90.83 -0.28 -2.37 16 11 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 12 C -0.16 -2.32 6.67 -26.94 -0.18 -2.50 16 13 C 0.53 8.61 7.85 -11.09 -0.09 8.52 16 14 O -0.50 -8.59 14.48 5.60 0.08 -8.51 16 15 N -0.55 -9.40 2.91 -108.26 -0.32 -9.71 16 16 C 0.05 0.78 6.52 -67.93 -0.44 0.34 16 17 C -0.19 -2.42 9.73 -26.70 -0.26 -2.68 16 18 C -0.18 -2.25 10.05 -26.70 -0.27 -2.52 16 19 C 0.54 10.56 7.30 -11.09 -0.08 10.48 16 20 O -0.46 -10.64 16.52 5.60 0.09 -10.55 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.02 0.54 8.12 -51.93 -0.42 0.12 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.12 1.71 7.74 -51.93 -0.40 1.31 16 26 H 0.14 2.05 7.95 -51.93 -0.41 1.64 16 27 H 0.13 1.91 5.41 -51.93 -0.28 1.63 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 261.02 15.07 3.93 3.93 Total: -1.00 -31.19 261.02 -6.16 -37.35 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.57 Total: -1.01 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.10 Total: -2.79 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.42 Total: -35.20 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.19 -6.16 -37.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.119 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds