Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 120.00016 * 2 1 4 4 H 1.48499 * 109.47013 * 240.00263 * 3 2 1 5 5 H 1.48498 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46516 * 120.00401 * 3 2 1 7 7 C 1.37877 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.34325 * 126.44374 * 89.99692 * 10 9 7 12 12 N 1.34485 * 107.66767 * 179.97438 * 11 10 9 13 13 C 1.30250 * 108.70025 * 0.02562 * 12 11 10 14 14 C 1.50699 * 125.62069 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.75483 * 182.04293 * 14 13 12 16 16 C 1.55306 * 110.84826 * 305.74223 * 14 13 12 17 17 C 1.54951 * 100.94221 * 152.32049 * 16 14 13 18 18 O 1.43644 * 105.13759 * 323.55460 * 17 16 14 19 19 C 1.43247 * 109.97140 * 24.42629 * 18 17 16 20 20 O 1.33974 * 108.76338 * 359.97438 * 13 12 11 21 21 H 0.97001 * 119.99690 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47025 * 60.00540 * 9 7 2 23 23 H 1.09003 * 109.46985 * 300.00002 * 9 7 2 24 24 H 1.08000 * 126.17016 * 359.96108 * 11 10 9 25 25 H 1.08996 * 111.12174 * 270.24088 * 16 14 13 26 26 H 1.08997 * 111.12360 * 34.40558 * 16 14 13 27 27 H 1.08998 * 110.30550 * 204.63961 * 17 16 14 28 28 H 1.09000 * 110.31095 * 82.47019 * 17 16 14 29 29 H 1.08996 * 109.82974 * 238.77781 * 19 18 17 30 30 H 1.08996 * 109.90178 * 117.84491 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7489 -4.2511 1.0800 12 7 3.5758 -5.2193 0.6472 13 6 3.5748 -5.2179 -0.6553 14 6 4.3701 -6.1481 -1.5346 15 1 4.2155 -5.9111 -2.5873 16 6 5.8786 -6.0999 -1.1685 17 6 6.3304 -7.5192 -1.5955 18 8 5.2252 -8.3779 -1.2721 19 6 4.0094 -7.6209 -1.2443 20 8 2.7502 -4.2532 -1.0846 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.5397 -4.0054 2.1107 25 1 6.3979 -5.3329 -1.7430 26 1 6.0184 -5.9486 -0.0982 27 1 7.2176 -7.8178 -1.0370 28 1 6.5299 -7.5465 -2.6668 29 1 3.5462 -7.7012 -0.2610 30 1 3.3244 -7.9911 -2.0070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -36.260270 kcal Electronic energy + Delta-G solvation = -14775.657535 eV Core-core repulsion = 12151.305827 eV Total energy + Delta-G solvation = -2624.351707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.65396 -39.34040 -34.14853 -33.76384 -32.80614 -30.66521 -29.45394 -26.58686 -23.67910 -22.82517 -22.42488 -20.81138 -20.03526 -17.22048 -16.67878 -16.41346 -15.73583 -15.41286 -14.84860 -14.71485 -13.66254 -13.33038 -13.11869 -12.67149 -12.43994 -12.04722 -11.72725 -11.58883 -11.50724 -11.06498 -10.94296 -10.80986 -10.62144 -10.25627 -9.78413 -9.69148 -9.60445 -8.59666 -7.85765 -6.22031 -4.28268 2.15846 3.19698 3.23928 3.27084 3.28789 3.34604 3.78042 4.30708 4.36767 4.60735 4.80934 4.90988 5.02759 5.11958 5.13750 5.55880 5.60547 5.71611 5.83824 5.86787 5.92483 6.08610 6.34650 6.68381 6.83393 6.98387 7.20639 7.35403 7.71589 8.01748 8.37572 8.73814 9.36693 10.87451 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055248 B = 0.005693 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.681301 B = 4917.395869 C = 5151.622657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.090 3.910 10 C 0.032 3.968 11 C -0.085 4.085 12 N -0.469 5.469 13 C 0.142 3.858 14 C -0.017 4.017 15 H 0.107 0.893 16 C -0.145 4.145 17 C 0.053 3.947 18 O -0.381 6.381 19 C 0.064 3.936 20 O -0.201 6.201 21 H 0.267 0.733 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.178 0.822 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -10.817 -3.225 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.022 4.022 11 C -0.223 4.223 12 N -0.199 5.199 13 C -0.064 4.064 14 C -0.037 4.037 15 H 0.125 0.875 16 C -0.183 4.183 17 C -0.023 4.023 18 O -0.301 6.301 19 C -0.013 4.013 20 O -0.088 6.088 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.195 0.805 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.592 -11.320 -2.871 14.499 hybrid contribution -0.058 1.805 -0.362 1.842 sum 8.534 -9.515 -3.234 13.184 Atomic orbital electron populations 1.69929 1.06059 1.27511 1.49363 1.24979 0.94969 0.99433 0.94572 0.86465 0.79485 0.82137 0.78890 1.20046 1.20955 1.19941 1.20919 0.93184 0.89374 1.52746 0.92278 1.18070 0.90589 0.86063 0.99955 1.24899 0.98159 0.96061 0.83050 1.22870 1.01337 0.97482 1.00594 1.70156 1.19715 1.21127 1.08926 1.25161 0.97354 0.93693 0.90176 1.20885 0.93240 0.91734 0.97822 0.87490 1.23363 0.92816 0.97919 1.04208 1.23375 0.90417 0.88568 0.99970 1.88405 1.15704 1.33953 1.92015 1.23168 0.87403 0.87864 1.02844 1.84409 1.47518 1.39239 1.37608 0.92362 0.94149 0.92374 0.80475 0.89312 0.88787 0.89375 0.91918 0.89922 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.41 9.09 -34.44 -0.31 -14.73 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.09 2.28 5.53 -29.03 -0.16 2.12 16 10 C 0.03 0.72 6.58 -35.69 -0.23 0.49 16 11 C -0.08 -1.77 11.80 -17.77 -0.21 -1.98 16 12 N -0.47 -9.28 10.89 -11.10 -0.12 -9.40 16 13 C 0.14 2.63 6.91 -12.95 -0.09 2.54 16 14 C -0.02 -0.23 3.53 -89.82 -0.32 -0.55 16 15 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.14 -1.71 6.60 -24.48 -0.16 -1.87 16 17 C 0.05 0.54 7.78 38.19 0.30 0.84 16 18 O -0.38 -5.00 11.36 -35.23 -0.40 -5.40 16 19 C 0.06 0.83 7.39 37.88 0.28 1.11 16 20 O -0.20 -4.33 10.78 5.34 0.06 -4.27 16 21 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 22 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 24 H 0.18 3.34 8.06 -52.49 -0.42 2.92 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 264.45 15.07 3.99 3.99 Total: -1.00 -30.01 264.45 -5.50 -35.51 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -3.73 Total: -1.39 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.01 Total: -10.40 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.62 Total: -34.00 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.34 Total: -9.67 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.01 -5.50 -35.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.749 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds