Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48501 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46616 * 299.99631 * 3 2 1 6 6 H 1.48501 * 109.47204 * 59.99083 * 3 2 1 7 7 C 1.37874 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00813 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46985 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.47117 * 305.00041 * 10 9 7 12 12 N 1.46893 * 109.47244 * 64.99956 * 10 9 7 13 13 C 1.50700 * 109.46942 * 185.00404 * 10 9 7 14 14 C 1.38290 * 119.99739 * 264.97291 * 13 10 9 15 15 C 1.38206 * 120.14659 * 180.02562 * 14 13 10 16 16 C 1.38279 * 120.14615 * 359.97438 * 15 14 13 17 17 C 1.38531 * 120.00194 * 359.72202 * 16 15 14 18 18 O 1.35993 * 120.07443 * 180.27554 * 17 16 15 19 19 C 1.38517 * 120.00418 * 85.00160 * 13 10 9 20 20 O 1.35995 * 120.07084 * 359.97438 * 19 13 10 21 21 H 0.97002 * 120.00173 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46822 * 60.00147 * 9 7 2 23 23 H 1.08997 * 109.47187 * 299.99790 * 9 7 2 24 24 H 1.00902 * 110.99927 * 60.00057 * 12 10 9 25 25 H 1.00901 * 111.00279 * 183.95279 * 12 10 9 26 26 H 1.08007 * 119.92353 * 0.02967 * 14 13 10 27 27 H 1.08001 * 119.92608 * 180.02562 * 15 14 13 28 28 H 1.08003 * 119.99902 * 180.02562 * 16 15 14 29 29 H 0.96700 * 113.99787 * 270.29406 * 18 17 16 30 30 H 0.96700 * 114.00111 * 90.00410 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8413 12 7 3.0083 -3.6540 1.2557 13 6 1.4958 -4.9637 -0.1234 14 6 1.1636 -5.6810 1.0113 15 6 0.4768 -6.8753 0.9012 16 6 0.1183 -7.3579 -0.3440 17 6 0.4424 -6.6412 -1.4844 18 8 0.0856 -7.1117 -2.7094 19 6 1.1401 -5.4418 -1.3738 20 8 1.4660 -4.7377 -2.4907 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.3960 -3.7518 2.0517 25 1 3.7160 -4.3732 1.2533 26 1 1.4415 -5.3070 1.9857 27 1 0.2189 -7.4324 1.7897 28 1 -0.4188 -8.2913 -0.4273 29 1 0.7469 -7.6870 -3.1177 30 1 2.3268 -4.9701 -2.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156946.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -63.687053 kcal Electronic energy + Delta-G solvation = -15075.633860 eV Core-core repulsion = 12450.092837 eV Total energy + Delta-G solvation = -2625.541022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11794 -37.20587 -36.43876 -34.84698 -32.37544 -29.50315 -29.01395 -28.14773 -24.50931 -22.25582 -22.17897 -19.90970 -18.42256 -17.46231 -16.41125 -15.97959 -15.84168 -15.02304 -14.56497 -14.28600 -14.22332 -13.57420 -13.09555 -12.36016 -12.10752 -11.84490 -11.78789 -11.13360 -11.08216 -10.77536 -10.51418 -10.23003 -10.04266 -9.60649 -9.01866 -8.40583 -8.28509 -8.22212 -7.99495 -5.85548 -3.84507 1.32495 1.43362 3.40656 3.47455 3.52973 3.70965 4.20039 4.39024 4.58677 5.03071 5.12612 5.26037 5.48104 5.54429 5.56225 5.88901 6.01052 6.21152 6.39985 6.48863 6.61783 6.81931 6.95246 7.55077 7.61929 7.74417 8.00675 8.02782 8.11726 8.16918 8.57288 9.21413 9.76808 11.26334 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.007266 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.914289 B = 3852.679520 C = 4128.468394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.049 3.951 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.492 4.492 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.138 3.862 11 H 0.080 0.920 12 N -0.822 5.822 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.111 4.111 16 C -0.149 4.149 17 C 0.076 3.924 18 O -0.489 6.489 19 C 0.087 3.913 20 O -0.474 6.474 21 H 0.257 0.743 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.335 0.665 25 H 0.321 0.679 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.381 0.619 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -15.859 -0.638 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.026 3.974 11 H 0.098 0.902 12 N -0.350 5.350 13 C -0.110 4.110 14 C -0.140 4.140 15 C -0.129 4.129 16 C -0.167 4.167 17 C 0.031 3.969 18 O -0.298 6.298 19 C 0.041 3.959 20 O -0.283 6.283 21 H 0.067 0.933 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.149 0.851 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.235 0.765 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.170 -14.371 -0.658 14.731 hybrid contribution 0.709 -0.578 -0.074 0.918 sum 3.879 -14.949 -0.731 15.461 Atomic orbital electron populations 1.69993 1.06018 1.26184 1.51995 1.25031 0.94805 0.99178 0.95998 0.86524 0.80136 0.83962 0.77261 1.19766 1.21342 1.21303 1.21176 0.93306 0.90042 1.48557 0.91971 1.19110 0.92775 0.90354 0.97464 1.20711 0.94841 0.89844 0.91982 0.90161 1.58846 1.17834 1.54137 1.04136 1.21755 0.98663 0.98621 0.91994 1.20951 0.99777 0.94993 0.98289 1.20955 0.98629 0.96455 0.96870 1.21200 1.02799 1.00737 0.91977 1.18850 0.99733 0.93035 0.85265 1.84937 1.46123 1.68556 1.30160 1.18644 0.99080 0.91335 0.86842 1.85036 1.40279 1.62501 1.40465 0.93328 0.95600 0.96818 0.85120 0.86787 0.85680 0.85754 0.85595 0.76471 0.76595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.29 55.43 0.74 -27.39 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.49 -14.23 8.84 -34.44 -0.30 -14.54 16 8 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.04 1.07 4.60 -27.88 -0.13 0.94 16 10 C 0.14 2.81 2.65 -68.87 -0.18 2.63 16 11 H 0.08 1.66 7.69 -51.92 -0.40 1.26 16 12 N -0.82 -14.84 8.54 -5.65 -0.05 -14.89 16 13 C -0.11 -1.91 5.06 -104.50 -0.53 -2.43 16 14 C -0.12 -1.85 9.27 -39.57 -0.37 -2.22 16 15 C -0.11 -1.47 10.04 -39.58 -0.40 -1.87 16 16 C -0.15 -2.00 9.98 -39.46 -0.39 -2.40 16 17 C 0.08 1.17 6.72 -39.12 -0.26 0.91 16 18 O -0.49 -6.73 13.29 -34.20 -0.45 -7.19 16 19 C 0.09 1.51 6.69 -39.12 -0.26 1.25 16 20 O -0.47 -8.22 12.42 -34.20 -0.42 -8.65 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.33 5.76 7.21 -39.29 -0.28 5.48 16 25 H 0.32 4.73 9.06 -39.29 -0.36 4.37 16 26 H 0.13 1.72 6.28 -52.48 -0.33 1.39 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.38 3.04 9.06 45.56 0.41 3.45 16 30 H 0.38 4.40 9.06 45.56 0.41 4.82 16 LS Contribution 264.52 15.07 3.99 3.99 Total: -1.00 -35.44 264.52 -5.92 -41.36 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.77 Total: 11.64 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.92 Total: -16.37 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.69 Total: -42.28 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.88 Total: -15.83 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.44 -5.92 -41.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156946.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.324 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds