Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48501 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46616 * 299.99631 * 3 2 1 6 6 H 1.48501 * 109.47204 * 59.99083 * 3 2 1 7 7 C 1.37874 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00813 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46985 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.47117 * 305.00041 * 10 9 7 12 12 N 1.46893 * 109.47244 * 64.99956 * 10 9 7 13 13 C 1.50700 * 109.46942 * 185.00404 * 10 9 7 14 14 C 1.38290 * 119.99739 * 264.97291 * 13 10 9 15 15 C 1.38206 * 120.14659 * 180.02562 * 14 13 10 16 16 C 1.38279 * 120.14615 * 359.97438 * 15 14 13 17 17 C 1.38531 * 120.00194 * 359.72202 * 16 15 14 18 18 O 1.35993 * 120.07443 * 180.27554 * 17 16 15 19 19 C 1.38517 * 120.00418 * 85.00160 * 13 10 9 20 20 O 1.35995 * 120.07084 * 359.97438 * 19 13 10 21 21 H 0.97002 * 120.00173 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46822 * 60.00147 * 9 7 2 23 23 H 1.08997 * 109.47187 * 299.99790 * 9 7 2 24 24 H 1.00902 * 110.99927 * 60.00057 * 12 10 9 25 25 H 1.00901 * 111.00279 * 183.95279 * 12 10 9 26 26 H 1.08007 * 119.92353 * 0.02967 * 14 13 10 27 27 H 1.08001 * 119.92608 * 180.02562 * 15 14 13 28 28 H 1.08003 * 119.99902 * 180.02562 * 16 15 14 29 29 H 0.96700 * 113.99787 * 270.29406 * 18 17 16 30 30 H 0.96700 * 114.00111 * 90.00410 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8413 12 7 3.0083 -3.6540 1.2557 13 6 1.4958 -4.9637 -0.1234 14 6 1.1636 -5.6810 1.0113 15 6 0.4768 -6.8753 0.9012 16 6 0.1183 -7.3579 -0.3440 17 6 0.4424 -6.6412 -1.4844 18 8 0.0856 -7.1117 -2.7094 19 6 1.1401 -5.4418 -1.3738 20 8 1.4660 -4.7377 -2.4907 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.3960 -3.7518 2.0517 25 1 3.7160 -4.3732 1.2533 26 1 1.4415 -5.3070 1.9857 27 1 0.2189 -7.4324 1.7897 28 1 -0.4188 -8.2913 -0.4273 29 1 0.7469 -7.6870 -3.1177 30 1 2.3268 -4.9701 -2.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156946.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -93.449789 kcal Electronic energy + Delta-G solvation = -15076.924469 eV Core-core repulsion = 12450.092837 eV Total energy + Delta-G solvation = -2626.831631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31533 -38.43190 -37.69477 -36.34011 -34.49013 -30.77553 -30.41647 -29.89005 -26.32576 -23.86416 -23.40331 -21.42486 -19.67821 -18.64636 -18.43004 -17.36415 -17.05981 -16.69959 -16.18434 -15.77295 -15.48668 -14.87281 -14.60486 -14.22757 -13.49609 -13.25005 -13.20039 -12.99966 -12.67132 -12.41796 -12.31883 -12.06943 -11.56276 -11.29399 -11.11974 -10.53896 -9.63193 -9.51592 -9.42139 -8.12588 -6.20052 0.19832 0.25671 1.41288 1.41962 1.56087 2.45364 2.59022 3.14554 3.20258 3.27924 3.85213 3.88011 4.03712 4.32919 4.43810 4.55773 4.80737 4.87848 5.02206 5.28514 5.33465 5.43091 5.49645 5.68413 5.81311 5.86239 6.27789 6.46839 6.65468 6.81834 6.94627 6.98724 7.46691 8.99864 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.007266 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.914289 B = 3852.679520 C = 4128.468394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.010 4.010 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.051 3.949 10 C 0.155 3.845 11 H 0.071 0.929 12 N -0.827 5.827 13 C -0.134 4.134 14 C -0.127 4.127 15 C -0.103 4.103 16 C -0.140 4.140 17 C 0.071 3.929 18 O -0.501 6.501 19 C 0.064 3.936 20 O -0.500 6.500 21 H 0.259 0.741 22 H -0.017 1.017 23 H -0.015 1.015 24 H 0.340 0.660 25 H 0.343 0.657 26 H 0.137 0.863 27 H 0.163 0.837 28 H 0.157 0.843 29 H 0.406 0.594 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 -17.182 0.017 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.206 4.206 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.014 3.986 10 C 0.043 3.957 11 H 0.089 0.911 12 N -0.358 5.358 13 C -0.137 4.137 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.158 4.158 17 C 0.026 3.974 18 O -0.313 6.313 19 C 0.019 3.981 20 O -0.312 6.312 21 H 0.068 0.932 22 H 0.001 0.999 23 H 0.004 0.996 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.180 0.820 28 H 0.175 0.825 29 H 0.264 0.736 30 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.950 -15.732 -0.014 16.220 hybrid contribution 0.452 -0.276 -0.318 0.618 sum 4.402 -16.008 -0.332 16.606 Atomic orbital electron populations 1.70140 1.07855 1.27273 1.53112 1.25999 0.95710 1.03374 0.95550 0.85375 0.79117 0.78920 0.77434 1.18541 1.20829 1.20580 1.21535 0.93478 0.91324 1.48002 0.91871 1.18854 0.93158 0.92699 0.93938 1.20107 0.93575 0.89258 0.92758 0.91063 1.58686 1.18241 1.55540 1.03300 1.21513 1.00565 0.98211 0.93425 1.21171 0.99847 0.95647 0.97863 1.21361 0.96919 0.95507 0.98269 1.21591 1.01616 1.01365 0.91258 1.18960 0.99284 0.92665 0.86502 1.84866 1.47352 1.69195 1.29879 1.18929 1.00243 0.92402 0.86558 1.84964 1.41935 1.63408 1.40870 0.93198 0.99890 0.99639 0.84566 0.84306 0.84565 0.81993 0.82492 0.73607 0.74406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.29 21.45 0.28 -60.08 16 2 C -0.01 -0.63 5.46 84.65 0.46 -0.17 16 3 Si 0.97 46.65 29.54 68.60 2.03 48.67 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.51 -29.88 8.84 25.60 0.23 -29.65 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.05 2.82 4.60 29.85 0.14 2.96 16 10 C 0.16 6.46 2.65 44.17 0.12 6.58 16 11 H 0.07 3.03 7.69 -2.38 -0.02 3.01 16 12 N -0.83 -29.58 8.54 -171.80 -1.47 -31.05 16 13 C -0.13 -4.78 5.06 -19.79 -0.10 -4.88 16 14 C -0.13 -3.68 9.27 22.27 0.21 -3.48 16 15 C -0.10 -2.39 10.04 22.27 0.22 -2.16 16 16 C -0.14 -3.34 9.98 22.35 0.22 -3.12 16 17 C 0.07 2.08 6.72 22.57 0.15 2.23 16 18 O -0.50 -12.94 13.29 -79.64 -1.06 -14.00 16 19 C 0.06 2.24 6.69 22.57 0.15 2.39 16 20 O -0.50 -17.88 12.42 -79.65 -0.99 -18.87 16 21 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 23 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 24 H 0.34 11.55 7.21 -89.69 -0.65 10.90 16 25 H 0.34 9.69 9.06 -89.69 -0.81 8.88 16 26 H 0.14 3.53 6.28 -2.91 -0.02 3.51 16 27 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.41 5.65 9.06 -74.06 -0.67 4.97 16 30 H 0.40 9.58 9.06 -74.06 -0.67 8.91 16 Total: -1.00 -78.09 264.52 -1.00 -79.10 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -1.60 Total: 25.53 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 1.80 Total: -29.30 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -1.18 Total: -91.13 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -2.05 Total: -32.86 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.09 -1.00 -79.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156946.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.354 kcal (2) G-P(sol) polarization free energy of solvation -78.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds