Wall clock time and date at job start Mon Mar 30 2020 03:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.45857 * 2 1 4 4 C 1.35935 * 126.31986 * 59.29475 * 3 2 1 5 5 N 1.33069 * 107.97737 * 180.02562 * 4 3 2 6 6 C 1.32811 * 108.64920 * 0.02562 * 5 4 3 7 7 C 1.39805 * 125.79898 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99951 * 179.97438 * 7 6 5 9 9 C 1.40336 * 119.99860 * 359.96974 * 7 6 5 10 10 N 1.30630 * 119.99850 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48510 * 109.46809 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47181 * 120.00041 * 11 9 7 14 14 H 1.48496 * 109.47320 * 240.00300 * 11 9 7 15 15 O 1.34593 * 126.31534 * 239.32144 * 3 2 1 16 16 C 1.54512 * 110.51383 * 237.38756 * 2 1 3 17 17 C 1.54792 * 103.91344 * 241.19057 * 16 2 1 18 18 O 1.44427 * 104.85718 * 336.11614 * 17 16 2 19 19 C 1.44427 * 105.27407 * 40.46618 * 18 17 16 20 20 H 1.09000 * 109.46480 * 60.70597 * 1 2 3 21 21 H 1.08997 * 109.46871 * 180.70139 * 1 2 3 22 22 H 1.08996 * 109.47167 * 300.71008 * 1 2 3 23 23 H 1.07996 * 126.01486 * 0.04391 * 4 3 2 24 24 H 0.97000 * 119.99988 * 179.97438 * 10 9 7 25 25 H 1.09002 * 110.50723 * 359.86719 * 16 2 1 26 26 H 1.08998 * 110.50664 * 122.57343 * 16 2 1 27 27 H 1.09005 * 110.38839 * 217.24803 * 17 16 2 28 28 H 1.08999 * 110.40003 * 94.99316 * 17 16 2 29 29 H 1.08997 * 110.36980 * 200.65557 * 19 18 17 30 30 H 1.09004 * 110.46704 * 78.36624 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0568 1.4120 0.0000 4 6 1.8142 2.3618 0.9417 5 7 2.4556 3.4706 0.5814 6 6 3.0927 3.2405 -0.5610 7 6 3.8786 4.1622 -1.2591 8 1 4.3565 3.8736 -2.1835 9 6 4.0465 5.4625 -0.7585 10 7 3.4688 5.8114 0.3600 11 14 5.0960 6.6943 -1.6915 12 1 5.6355 6.0556 -2.9189 13 1 4.2665 7.8674 -2.0669 14 1 6.2210 7.1389 -0.8302 15 8 2.8538 1.9654 -0.9327 16 6 2.0715 -0.7799 -1.2190 17 6 2.8801 -1.9400 -0.5893 18 8 3.2417 -1.4678 0.7268 19 6 2.0712 -0.7796 1.2190 20 1 -0.3632 0.5028 -0.8963 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5248 0.8835 23 1 1.2079 2.2382 1.8268 24 1 3.5851 6.7100 0.7062 25 1 1.2491 -1.1675 -1.8203 26 1 2.7201 -0.1442 -1.8216 27 1 3.7744 -2.1432 -1.1786 28 1 2.2639 -2.8361 -0.5149 29 1 2.3441 -0.0913 2.0189 30 1 1.3286 -1.4952 1.5720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:09 Heat of formation + Delta-G solvation = -62.246504 kcal Electronic energy + Delta-G solvation = -15400.303002 eV Core-core repulsion = 12774.824447 eV Total energy + Delta-G solvation = -2625.478555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10159 -40.36224 -35.89827 -35.10887 -34.41209 -31.03750 -30.36241 -27.46580 -26.90837 -24.11749 -22.92409 -22.42327 -20.36865 -19.37958 -17.85553 -17.19515 -16.94800 -16.35459 -16.28357 -15.82724 -14.98055 -14.81877 -14.14550 -13.80408 -13.57695 -13.46811 -13.19778 -12.96430 -12.69540 -12.41355 -12.07839 -11.97834 -11.94516 -11.64525 -11.58628 -11.14015 -10.75635 -10.17336 -9.28457 -8.60922 -6.65310 1.08648 1.38669 1.55663 1.58101 2.15623 2.43619 2.68577 3.08002 3.28847 3.60025 3.88241 4.06001 4.16471 4.25934 4.30187 4.51674 4.68842 4.70991 4.76809 4.81848 4.87359 4.96745 5.12932 5.18200 5.22316 5.29369 5.76517 5.88696 6.00106 6.16609 6.52239 6.73617 7.96670 8.36112 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.048903 B = 0.007407 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.425212 B = 3779.065312 C = 3987.943537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.008 3.992 3 C -0.167 4.167 4 C -0.034 4.034 5 N -0.575 5.575 6 C 0.293 3.707 7 C -0.472 4.472 8 H 0.096 0.904 9 C 0.028 3.972 10 N -0.773 5.773 11 Si 1.013 2.987 12 H -0.251 1.251 13 H -0.259 1.259 14 H -0.261 1.261 15 O -0.256 6.256 16 C -0.148 4.148 17 C 0.047 3.953 18 O -0.405 6.405 19 C 0.060 3.940 20 H 0.049 0.951 21 H 0.098 0.902 22 H 0.061 0.939 23 H 0.167 0.833 24 H 0.287 0.713 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 -9.984 -2.097 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 C -0.221 4.221 4 C -0.177 4.177 5 N -0.307 5.307 6 C 0.108 3.892 7 C -0.507 4.507 8 H 0.114 0.886 9 C -0.192 4.192 10 N -0.398 5.398 11 Si 0.831 3.169 12 H -0.174 1.174 13 H -0.183 1.183 14 H -0.185 1.185 15 O -0.152 6.152 16 C -0.186 4.186 17 C -0.029 4.029 18 O -0.325 6.325 19 C -0.017 4.017 20 H 0.068 0.932 21 H 0.117 0.883 22 H 0.080 0.920 23 H 0.184 0.816 24 H 0.098 0.902 25 H 0.126 0.874 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.579 -9.301 -1.518 10.081 hybrid contribution 0.223 0.235 -0.512 0.606 sum -3.356 -9.066 -2.031 9.878 Atomic orbital electron populations 1.21808 0.90332 1.03589 1.02350 1.20214 0.96838 0.85684 0.96524 1.23059 1.06594 0.98274 0.94192 1.23248 1.03068 0.90638 1.00793 1.71341 1.18673 1.26281 1.14414 1.22796 0.95398 0.80063 0.90937 1.18660 1.28251 0.94955 1.08858 0.88559 1.27046 0.96557 0.99922 0.95708 1.70100 1.32284 1.20123 1.17291 0.84721 0.77380 0.76235 0.78577 1.17405 1.18336 1.18541 1.84350 1.57135 1.26858 1.46893 1.23119 1.00968 0.97035 0.97460 1.23632 1.00075 0.96282 0.82945 1.89081 1.36952 1.74041 1.32415 1.23709 0.87936 0.94756 0.95268 0.93184 0.88343 0.91986 0.81568 0.90202 0.87435 0.93267 0.89030 0.88732 0.90835 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.18 71.98 0.59 -2.66 16 2 C 0.01 0.28 0.96 -51.91 -0.05 0.23 16 3 C -0.17 -8.03 5.75 25.15 0.14 -7.89 16 4 C -0.03 -1.78 11.17 83.97 0.94 -0.85 16 5 N -0.58 -35.36 9.43 -309.36 -2.92 -38.27 16 6 C 0.29 18.00 7.74 84.92 0.66 18.66 16 7 C -0.47 -27.53 9.45 23.16 0.22 -27.31 16 8 H 0.10 5.23 7.85 -2.91 -0.02 5.21 16 9 C 0.03 1.51 5.50 85.38 0.47 1.98 16 10 N -0.77 -44.00 11.88 21.89 0.26 -43.74 16 11 Si 1.01 39.00 29.56 68.60 2.03 41.03 16 12 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 13 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 15 O -0.26 -14.49 9.57 -11.85 -0.11 -14.60 16 16 C -0.15 -4.54 6.39 31.72 0.20 -4.34 16 17 C 0.05 1.25 7.64 72.59 0.55 1.80 16 18 O -0.41 -14.07 11.65 -148.98 -1.74 -15.80 16 19 C 0.06 1.86 6.71 72.49 0.49 2.34 16 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.10 1.78 8.12 -2.39 -0.02 1.76 16 22 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 23 H 0.17 7.36 8.06 -2.91 -0.02 7.34 16 24 H 0.29 14.49 8.29 -92.71 -0.77 13.72 16 25 H 0.11 2.53 7.73 -2.39 -0.02 2.51 16 26 H 0.05 1.87 6.78 -2.39 -0.02 1.85 16 27 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.55 7.55 -2.39 -0.02 2.53 16 30 H 0.10 2.30 7.85 -2.39 -0.02 2.28 16 Total: -1.00 -74.02 257.63 2.87 -71.15 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.14 Total: 18.26 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.21 Total: -18.02 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.66 Total: -82.01 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.85 Total: -30.41 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -74.02 2.87 -71.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.905 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds