Wall clock time and date at job start Mon Mar 30 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.34328 * 126.16814 * 85.01838 * 10 9 7 12 12 O 1.34752 * 107.10986 * 180.02562 * 11 10 9 13 13 C 1.33967 * 107.75893 * 0.02562 * 12 11 10 14 14 C 1.50696 * 125.61837 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.87066 * 164.31987 * 14 13 12 16 16 C 1.54102 * 109.87872 * 285.32858 * 14 13 12 17 17 C 1.54815 * 104.18982 * 121.45513 * 16 14 13 18 18 C 1.55001 * 102.08955 * 20.88005 * 17 16 14 19 19 O 1.43746 * 109.88039 * 43.31295 * 14 13 12 20 20 N 1.30251 * 108.75795 * 359.72501 * 13 12 11 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.07996 * 126.44298 * 0.02890 * 11 10 9 25 25 H 1.08994 * 110.48713 * 240.12977 * 16 14 13 26 26 H 1.08998 * 110.48851 * 2.78165 * 16 14 13 27 27 H 1.08995 * 110.90920 * 139.07990 * 17 16 14 28 28 H 1.08997 * 110.90678 * 262.65059 * 17 16 14 29 29 H 1.08999 * 110.61561 * 81.48029 * 18 17 16 30 30 H 1.09001 * 110.61566 * 204.47690 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.8161 -4.1865 1.0791 12 8 3.6155 -5.1788 0.6409 13 6 3.5091 -5.2301 -0.6936 14 6 4.2340 -6.1956 -1.5954 15 1 3.7660 -6.2060 -2.5797 16 6 5.7135 -5.7836 -1.7229 17 6 6.4966 -7.0194 -1.2167 18 6 5.4516 -8.1531 -1.3749 19 8 4.2024 -7.5148 -1.0252 20 7 2.6717 -4.3114 -1.0826 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.6733 -3.8837 2.1058 25 1 5.9627 -5.5738 -2.7630 26 1 5.9233 -4.9163 -1.0969 27 1 7.3715 -7.2071 -1.8389 28 1 6.7834 -6.8970 -0.1722 29 1 5.4237 -8.5083 -2.4050 30 1 5.6687 -8.9734 -0.6907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260159087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:51 Heat of formation + Delta-G solvation = -56.058930 kcal Electronic energy + Delta-G solvation = -14829.897324 eV Core-core repulsion = 12204.687082 eV Total energy + Delta-G solvation = -2625.210242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.24879 -40.34750 -36.40873 -35.00327 -33.38351 -32.72271 -30.59909 -28.49509 -25.48455 -24.61619 -22.86638 -22.23691 -21.51845 -18.63768 -18.40968 -17.58133 -17.12781 -16.93947 -16.60236 -16.22778 -15.09079 -14.63178 -14.62595 -14.42853 -14.05013 -13.34721 -12.93106 -12.77861 -12.72551 -12.57623 -12.20648 -12.18503 -11.98364 -11.75142 -11.46840 -11.43702 -10.94097 -10.63247 -9.64445 -8.23858 -6.37243 0.50331 1.39041 1.42970 1.50952 1.71735 1.81178 2.39972 2.58649 3.07930 3.25255 3.50032 3.80985 3.96730 4.12540 4.24606 4.34095 4.34474 4.71695 4.75775 4.79920 4.90262 4.97908 5.00881 5.14162 5.21537 5.40490 5.44392 5.67613 5.75057 6.09978 6.71149 6.84355 7.30991 8.86666 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.052272 B = 0.005904 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.533324 B = 4741.081969 C = 4983.649151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.099 3.901 10 C -0.002 4.002 11 C -0.085 4.085 12 O -0.201 6.201 13 C 0.173 3.827 14 C 0.179 3.821 15 H 0.120 0.880 16 C -0.146 4.146 17 C -0.144 4.144 18 C 0.038 3.962 19 O -0.393 6.393 20 N -0.504 5.504 21 H 0.268 0.732 22 H 0.027 0.973 23 H 0.003 0.997 24 H 0.242 0.758 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.896 -13.850 -1.988 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.062 3.938 10 C -0.121 4.121 11 C -0.155 4.155 12 O -0.087 6.087 13 C -0.035 4.035 14 C 0.120 3.880 15 H 0.137 0.863 16 C -0.184 4.184 17 C -0.182 4.182 18 C -0.037 4.037 19 O -0.312 6.312 20 N -0.236 5.236 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.021 0.979 24 H 0.258 0.742 25 H 0.133 0.867 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.430 -13.780 -2.455 19.398 hybrid contribution 0.005 1.101 0.704 1.307 sum 13.434 -12.679 -1.750 18.556 Atomic orbital electron populations 1.70069 1.07662 1.28298 1.50645 1.25915 0.95818 1.03104 0.94196 0.85421 0.78270 0.77748 0.79122 1.19739 1.20172 1.18812 1.21229 0.92872 0.91057 1.51991 0.93098 1.17417 0.91397 0.88384 0.96625 1.22372 1.02094 0.99330 0.88321 1.25180 0.96801 0.91527 1.01949 1.84378 1.54291 1.46024 1.24030 1.26826 0.97940 0.98411 0.80317 1.21176 0.95863 0.79459 0.91469 0.86271 1.23060 0.90579 1.00027 1.04774 1.23165 0.99327 0.92580 1.03120 1.24005 0.80769 0.96199 1.02737 1.88995 1.40420 1.24917 1.76874 1.70246 1.11973 1.08291 1.33081 0.92296 0.95521 0.97886 0.74235 0.86747 0.91708 0.86422 0.90780 0.89270 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -31.46 9.09 25.60 0.23 -31.23 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.10 5.63 5.52 29.10 0.16 5.79 16 10 C 0.00 -0.11 6.30 41.26 0.26 0.14 16 11 C -0.09 -3.54 12.08 66.93 0.81 -2.73 16 12 O -0.20 -7.95 10.78 -3.37 -0.04 -7.99 16 13 C 0.17 6.76 7.02 88.34 0.62 7.38 16 14 C 0.18 5.06 3.98 30.22 0.12 5.18 16 15 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 16 C -0.15 -3.03 6.63 31.59 0.21 -2.82 16 17 C -0.14 -2.10 7.16 31.90 0.23 -1.87 16 18 C 0.04 0.60 7.72 72.67 0.56 1.16 16 19 O -0.39 -10.67 11.19 -148.61 -1.66 -12.33 16 20 N -0.50 -23.86 11.29 -291.99 -3.30 -27.16 16 21 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 22 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 24 H 0.24 8.11 8.06 -2.91 -0.02 8.09 16 25 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.62 7.69 -2.39 -0.02 1.60 16 27 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.91 265.29 2.11 -70.80 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.13 Total: 4.15 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 3.66 Total: -18.05 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.01 Total: -83.20 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.70 Total: -20.32 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -72.91 2.11 -70.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260159087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.739 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds