Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30994 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48502 * 109.47451 * 274.98260 * 3 2 1 5 5 H 1.48507 * 109.46930 * 34.98392 * 3 2 1 6 6 H 1.48499 * 109.47068 * 154.98052 * 3 2 1 7 7 C 1.39732 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99764 * 186.00536 * 7 2 1 9 9 C 1.41257 * 120.00000 * 6.00519 * 7 2 1 10 10 C 1.38799 * 126.67604 * 174.32723 * 9 7 2 11 11 O 1.34417 * 106.50657 * 179.97438 * 10 9 7 12 12 C 1.34058 * 108.38772 * 359.97438 * 11 10 9 13 13 C 1.50709 * 125.08126 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.48058 * 164.97256 * 13 12 11 15 15 C 1.53085 * 109.47889 * 285.00015 * 13 12 11 16 16 C 1.53185 * 109.16153 * 177.57803 * 15 13 12 17 17 C 1.53184 * 109.04498 * 303.03622 * 16 15 13 18 18 C 1.53089 * 109.16068 * 56.97171 * 17 16 15 19 19 O 1.42898 * 109.41888 * 302.39077 * 18 17 16 20 20 N 1.29913 * 109.84534 * 0.02562 * 12 11 10 21 21 H 0.97002 * 119.99628 * 359.97438 * 1 2 3 22 22 H 1.08000 * 126.74398 * 359.71422 * 10 9 7 23 23 H 1.09000 * 109.52739 * 297.49427 * 15 13 12 24 24 H 1.09001 * 109.52270 * 57.68615 * 15 13 12 25 25 H 1.08999 * 109.54376 * 183.16359 * 16 15 13 26 26 H 1.08999 * 109.60159 * 62.94619 * 16 15 13 27 27 H 1.09004 * 109.51840 * 297.07032 * 17 16 15 28 28 H 1.08996 * 109.57254 * 176.91203 * 17 16 15 29 29 H 1.08999 * 109.48169 * 182.40154 * 18 17 16 30 30 H 1.09004 * 109.48700 * 62.38189 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.3862 2.1073 -1.3948 5 1 1.4980 2.6200 0.8028 6 1 3.5902 1.4120 0.5921 7 6 2.0086 -1.2101 -0.0005 8 1 3.0842 -1.2127 0.0973 9 6 1.3081 -2.4300 -0.1291 10 6 1.8637 -3.6956 -0.2562 11 8 0.8355 -4.5565 -0.3489 12 6 -0.3074 -3.8590 -0.2820 13 6 -1.6904 -4.4541 -0.3482 14 1 -2.4193 -3.7185 -0.0079 15 6 -2.0051 -4.8547 -1.7918 16 6 -3.3872 -5.5135 -1.8409 17 6 -3.4035 -6.7126 -0.8878 18 6 -3.0348 -6.2399 0.5208 19 8 -1.7526 -5.6098 0.4901 20 7 -0.0447 -2.5934 -0.1514 21 1 -0.4850 0.8401 0.0004 22 1 2.9153 -3.9401 -0.2806 23 1 -2.0016 -3.9676 -2.4252 24 1 -1.2530 -5.5596 -2.1464 25 1 -3.5940 -5.8519 -2.8562 26 1 -4.1464 -4.7939 -1.5346 27 1 -2.6796 -7.4550 -1.2240 28 1 -4.3995 -7.1550 -0.8746 29 1 -3.0031 -7.0959 1.1949 30 1 -3.7815 -5.5278 0.8725 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260172879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = -41.018131 kcal Electronic energy + Delta-G solvation = -15206.866721 eV Core-core repulsion = 12582.308697 eV Total energy + Delta-G solvation = -2624.558024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11042 -38.94084 -33.97356 -33.46565 -32.32738 -31.41905 -28.50572 -25.66113 -24.44329 -23.42320 -20.60737 -20.16706 -19.49543 -17.35101 -16.06220 -15.71807 -15.09580 -14.79915 -14.65303 -14.34587 -14.21886 -13.43530 -13.06289 -12.52868 -12.27494 -12.12731 -11.23626 -11.22800 -11.02403 -10.89436 -10.76320 -10.34485 -10.21853 -9.98407 -9.82559 -9.29799 -8.73915 -8.57144 -7.29511 -6.41811 -4.25613 2.92115 3.17145 3.18592 3.22307 3.93140 4.09406 4.30518 4.45093 4.89976 4.94514 5.02475 5.19040 5.37055 5.55886 5.57434 5.61182 5.82212 5.87876 5.94780 6.05659 6.12899 6.27965 6.47347 6.91627 7.23950 7.41855 7.42591 7.59797 7.78565 8.36941 8.86205 9.03124 9.72629 10.53217 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.051872 B = 0.006901 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.663739 B = 4056.216078 C = 4298.780839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.177 3.823 10 C -0.280 4.280 11 O -0.218 6.218 12 C 0.140 3.860 13 C 0.203 3.797 14 H 0.090 0.910 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.061 3.939 19 O -0.374 6.374 20 N -0.434 5.434 21 H 0.271 0.729 22 H 0.182 0.818 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -7.582 -2.134 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.348 4.348 11 O -0.106 6.106 12 C -0.067 4.067 13 C 0.145 3.855 14 H 0.108 0.892 15 C -0.184 4.184 16 C -0.158 4.158 17 C -0.195 4.195 18 C -0.016 4.016 19 O -0.293 6.293 20 N -0.171 5.171 21 H 0.081 0.919 22 H 0.199 0.801 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.538 -7.128 -1.980 10.561 hybrid contribution 0.836 0.392 -0.207 0.946 sum -6.702 -6.736 -2.187 9.750 Atomic orbital electron populations 1.70078 1.06901 1.27644 1.34520 1.25858 0.94861 1.00699 0.93081 0.86305 0.80343 0.81220 0.78749 1.19754 1.20401 1.18768 1.18537 0.94045 0.88240 1.47788 0.89907 1.19408 0.86535 0.93001 0.94983 1.24590 0.90695 0.88672 1.30889 1.83971 1.14862 1.39503 1.72217 1.25242 0.87567 0.87586 1.06292 1.19897 0.88664 0.86727 0.90244 0.89226 1.22187 0.97365 1.01993 0.96876 1.21596 0.97118 0.97295 0.99769 1.22217 1.01991 0.98717 0.96558 1.22559 0.85595 0.97170 0.96273 1.88026 1.31513 1.42845 1.66909 1.71259 1.16519 1.12382 1.16912 0.91859 0.80066 0.90091 0.90762 0.91382 0.91576 0.91031 0.91069 0.88943 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.74 11.98 55.54 0.67 -21.08 16 2 C 0.07 2.04 5.49 -17.35 -0.10 1.94 16 3 Si 0.91 19.82 29.56 -169.99 -5.03 14.80 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.45 -12.98 9.38 -37.88 -0.36 -13.33 16 8 H 0.08 2.21 7.85 -52.49 -0.41 1.80 16 9 C 0.18 5.21 6.69 -84.53 -0.57 4.64 16 10 C -0.28 -7.49 12.28 30.94 0.38 -7.11 16 11 O -0.22 -5.75 10.72 5.12 0.05 -5.70 16 12 C 0.14 3.58 7.15 -13.09 -0.09 3.48 16 13 C 0.20 4.05 3.20 -27.83 -0.09 3.96 16 14 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 15 C -0.15 -2.40 5.40 -26.59 -0.14 -2.54 16 16 C -0.12 -1.48 6.03 -26.54 -0.16 -1.64 16 17 C -0.16 -1.79 6.14 -26.59 -0.16 -1.95 16 18 C 0.06 0.81 6.84 37.20 0.25 1.06 16 19 O -0.37 -7.08 10.39 -36.16 -0.38 -7.46 16 20 N -0.43 -12.57 9.60 -8.64 -0.08 -12.66 16 21 H 0.27 6.98 8.30 -40.82 -0.34 6.64 16 22 H 0.18 4.24 8.06 -52.49 -0.42 3.81 16 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -32.75 259.65 -5.66 -38.40 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.77 Total: 1.26 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.03 Total: -11.48 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.58 Total: -33.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.32 Total: -13.15 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.75 -5.66 -38.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.615 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds