Wall clock time and date at job start Mon Mar 30 2020 03:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48499 * 109.47005 * 264.68242 * 3 2 1 5 5 H 1.48503 * 109.47286 * 24.68591 * 3 2 1 6 6 H 1.48499 * 109.46765 * 144.68313 * 3 2 1 7 7 C 1.39726 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99720 * 349.36763 * 7 2 1 9 9 C 1.41256 * 120.00110 * 169.36376 * 7 2 1 10 10 C 1.38791 * 126.67570 * 173.85547 * 9 7 2 11 11 O 1.34430 * 106.50721 * 180.02562 * 10 9 7 12 12 C 1.34060 * 108.38637 * 0.02562 * 11 10 9 13 13 C 1.50694 * 125.07980 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.48289 * 195.02470 * 13 12 11 15 15 C 1.53097 * 109.47835 * 75.00277 * 13 12 11 16 16 C 1.53182 * 109.16320 * 182.41936 * 15 13 12 17 17 C 1.53178 * 109.04444 * 56.96028 * 16 15 13 18 18 C 1.53088 * 109.16591 * 303.02921 * 17 16 15 19 19 O 1.42900 * 109.48344 * 315.05041 * 13 12 11 20 20 N 1.29912 * 109.83932 * 0.02562 * 12 11 10 21 21 H 0.97010 * 119.99996 * 359.97438 * 1 2 3 22 22 H 1.08005 * 126.75148 * 359.97438 * 10 9 7 23 23 H 1.08992 * 109.52287 * 302.31158 * 15 13 12 24 24 H 1.08999 * 109.52324 * 62.50354 * 15 13 12 25 25 H 1.09004 * 109.52942 * 297.10094 * 16 15 13 26 26 H 1.08997 * 109.61999 * 176.88030 * 16 15 13 27 27 H 1.08998 * 109.52466 * 183.11701 * 17 16 15 28 28 H 1.09002 * 109.52122 * 62.93685 * 17 16 15 29 29 H 1.09006 * 109.47959 * 297.62339 * 18 17 16 30 30 H 1.09003 * 109.49360 * 177.59969 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.6038 1.9815 -1.3941 5 1 1.3897 2.6825 0.5847 6 1 3.4808 1.4752 0.8094 7 6 2.0086 -1.2101 0.0005 8 1 1.4824 -2.1373 0.1735 9 6 3.4030 -1.2207 -0.2252 10 6 4.2485 -2.3179 -0.1380 11 8 5.4829 -1.8730 -0.4306 12 6 5.4090 -0.5593 -0.6876 13 6 6.5773 0.3178 -1.0574 14 1 6.2939 1.3649 -0.9503 15 6 6.9819 0.0442 -2.5083 16 6 8.2070 0.8949 -2.8576 17 6 9.3339 0.5776 -1.8699 18 6 8.8383 0.8307 -0.4437 19 8 7.6799 0.0318 -0.1946 20 7 4.1800 -0.1553 -0.5691 21 1 -0.4850 0.8401 0.0004 22 1 3.9698 -3.3300 0.1159 23 1 7.2264 -1.0115 -2.6254 24 1 6.1569 0.3038 -3.1717 25 1 7.9485 1.9516 -2.7887 26 1 8.5352 0.6651 -3.8713 27 1 10.1909 1.2185 -2.0768 28 1 9.6260 -0.4674 -1.9739 29 1 8.5846 1.8846 -0.3287 30 1 9.6220 0.5660 0.2661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260172882.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:49 Heat of formation + Delta-G solvation = -46.661398 kcal Electronic energy + Delta-G solvation = -15338.294878 eV Core-core repulsion = 12713.492144 eV Total energy + Delta-G solvation = -2624.802734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.54136 -39.15369 -34.17409 -33.64650 -32.74234 -31.79633 -28.88091 -25.82642 -24.69722 -23.66237 -20.73547 -20.51821 -19.70477 -17.54271 -16.40511 -15.98020 -15.37824 -15.17279 -14.56316 -14.48684 -14.41603 -13.66309 -12.92149 -12.80645 -12.66215 -12.25992 -11.42870 -11.24904 -11.20162 -11.05159 -10.85149 -10.66597 -10.40477 -10.29777 -9.71503 -9.47809 -9.11505 -8.53159 -7.59279 -6.70118 -4.40032 2.62610 3.36500 3.41602 3.63031 3.73892 3.98321 4.12368 4.41579 4.74006 4.78531 4.83813 4.97736 5.15853 5.33107 5.39644 5.43259 5.62560 5.69503 5.77389 5.87704 5.96294 6.09147 6.28306 6.61209 6.85423 7.10539 7.27791 7.40697 7.56125 8.30305 8.58787 8.82362 9.26243 10.30847 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.008547 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.472183 B = 3275.133524 C = 3599.800209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.086 3.914 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.317 1.317 6 H -0.254 1.254 7 C -0.433 4.433 8 H 0.095 0.905 9 C 0.155 3.845 10 C -0.261 4.261 11 O -0.203 6.203 12 C 0.172 3.828 13 C 0.197 3.803 14 H 0.090 0.910 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.158 4.158 18 C 0.061 3.939 19 O -0.372 6.372 20 N -0.511 5.511 21 H 0.282 0.718 22 H 0.191 0.809 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.199 3.785 -4.017 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.132 4.132 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.247 1.247 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.040 3.960 10 C -0.329 4.329 11 O -0.089 6.089 12 C -0.033 4.033 13 C 0.138 3.862 14 H 0.107 0.893 15 C -0.186 4.186 16 C -0.158 4.158 17 C -0.195 4.195 18 C -0.016 4.016 19 O -0.291 6.291 20 N -0.252 5.252 21 H 0.092 0.908 22 H 0.208 0.792 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.838 4.261 -3.964 15.938 hybrid contribution 0.300 0.054 -0.073 0.314 sum 15.138 4.315 -4.037 16.251 Atomic orbital electron populations 1.69725 1.08003 1.30034 1.37586 1.26027 0.94855 1.02275 0.90025 0.85348 0.78116 0.77231 0.80073 1.20001 1.24711 1.17879 1.18409 0.87803 0.95899 1.44440 0.88710 1.19563 0.94591 0.86261 0.95576 1.24536 0.80271 1.00625 1.27498 1.84016 1.33415 1.23555 1.67918 1.24751 0.93630 0.81408 1.03536 1.19990 0.81530 0.95374 0.89262 0.89254 1.22204 0.98743 1.01791 0.95816 1.21599 0.94866 0.99997 0.99358 1.22221 0.98528 1.02871 0.95907 1.22600 0.87835 0.94930 0.96263 1.88031 1.22006 1.62000 1.57053 1.70030 1.01447 1.31658 1.22045 0.90793 0.79244 0.90373 0.89992 0.91562 0.91102 0.90877 0.90863 0.93024 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.61 13.94 55.54 0.77 -22.83 16 2 C 0.09 2.45 5.51 -17.35 -0.10 2.36 16 3 Si 0.96 24.48 25.80 -169.99 -4.39 20.10 16 4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.32 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.25 -6.65 6.45 56.52 0.36 -6.29 16 7 C -0.43 -12.62 9.94 -37.88 -0.38 -13.00 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 C 0.16 4.30 6.39 -84.54 -0.54 3.76 16 10 C -0.26 -6.55 12.28 30.94 0.38 -6.17 16 11 O -0.20 -4.94 10.72 5.08 0.05 -4.89 16 12 C 0.17 4.03 7.15 -13.09 -0.09 3.94 16 13 C 0.20 3.58 3.20 -27.84 -0.09 3.49 16 14 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 15 C -0.15 -2.16 5.40 -26.59 -0.14 -2.31 16 16 C -0.12 -1.31 6.03 -26.55 -0.16 -1.47 16 17 C -0.16 -1.59 6.14 -26.59 -0.16 -1.75 16 18 C 0.06 0.72 6.84 37.20 0.25 0.97 16 19 O -0.37 -6.45 10.39 -36.17 -0.38 -6.82 16 20 N -0.51 -13.54 6.60 -8.65 -0.06 -13.59 16 21 H 0.28 7.37 8.30 -40.82 -0.34 7.03 16 22 H 0.19 4.17 8.06 -52.48 -0.42 3.75 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -32.06 254.67 -5.00 -37.06 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.82 Total: -2.68 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.03 Total: -10.18 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.72 Total: -36.43 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.32 Total: -11.71 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.39 Total: 20.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.06 -5.00 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172882.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.599 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds