Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.90807 * 2 1 4 4 F 1.39898 * 109.47292 * 181.10147 * 3 2 1 5 5 F 1.39905 * 109.46687 * 301.09918 * 3 2 1 6 6 F 1.39893 * 109.47511 * 61.09804 * 3 2 1 7 7 N 1.47900 * 110.08458 * 238.78630 * 2 1 3 8 8 C 1.48539 * 105.81753 * 265.88780 * 7 2 1 9 9 C 1.54931 * 103.22659 * 320.79100 * 8 7 2 10 10 C 1.54001 * 109.91530 * 121.09675 * 2 1 3 11 11 H 1.09000 * 110.31015 * 237.34071 * 10 2 1 12 12 C 1.50700 * 110.30777 * 359.41008 * 10 2 1 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 10 2 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 10 2 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 H 1.08994 * 109.47360 * 298.90579 * 1 2 3 21 21 H 1.09001 * 109.46759 * 58.90058 * 1 2 3 22 22 H 1.08995 * 109.46864 * 178.89918 * 1 2 3 23 23 H 1.00896 * 110.99904 * 26.39710 * 7 2 1 24 24 H 1.09001 * 110.66376 * 79.22706 * 8 7 2 25 25 H 1.09001 * 110.66093 * 202.19147 * 8 7 2 26 26 H 1.09002 * 110.72814 * 279.05586 * 9 8 7 27 27 H 1.09003 * 110.72028 * 155.77639 * 9 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0510 1.4386 0.0000 4 9 3.4497 1.4280 -0.0254 5 9 1.5692 2.1090 -1.1295 6 9 1.6105 2.0942 1.1546 7 7 2.0379 -0.7199 -1.1880 8 6 2.2732 -2.1178 -0.7444 9 6 2.8578 -1.9441 0.6799 10 6 2.0546 -0.7478 1.2398 11 1 2.7021 -0.0976 1.8280 12 6 0.9040 -1.2380 2.0807 13 1 -0.1122 -1.0422 1.7719 14 6 1.1487 -1.9372 3.2435 15 7 2.3862 -2.1760 3.6192 16 14 -0.2775 -2.5454 4.2854 17 1 0.2487 -3.2637 5.4737 18 1 -1.0959 -1.3880 4.7281 19 1 -1.1190 -3.4684 3.4821 20 1 -0.3634 0.4967 0.8996 21 1 -0.3633 0.5308 -0.8800 22 1 -0.3633 -1.0274 -0.0197 23 1 1.3697 -0.6878 -1.9432 24 1 1.3361 -2.6735 -0.7105 25 1 2.9897 -2.6137 -1.3993 26 1 3.9209 -1.7074 0.6343 27 1 2.6860 -2.8384 1.2790 28 1 3.1268 -1.8604 3.0779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260176584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -157.084669 kcal Electronic energy + Delta-G solvation = -16783.203148 eV Core-core repulsion = 13611.755362 eV Total energy + Delta-G solvation = -3171.447787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.39419 -46.92650 -46.82161 -38.57944 -33.16670 -31.20785 -29.06374 -26.23307 -24.96626 -23.35811 -20.41245 -19.65617 -17.73713 -17.67214 -17.11260 -16.30767 -15.20027 -14.25596 -13.83226 -13.78100 -13.73317 -13.42183 -13.31481 -13.08411 -13.02532 -12.47304 -12.27182 -12.05906 -11.26040 -11.13779 -10.76842 -10.74037 -10.37578 -10.29677 -10.14780 -9.82729 -8.58566 -8.42267 -8.20717 -6.42245 -4.18684 3.37333 3.38970 3.44881 3.57485 4.28829 4.45148 4.63466 4.77872 5.26496 5.30337 5.48566 5.60745 5.86329 5.88867 6.07161 6.23014 6.26937 6.59862 6.75619 6.76808 7.09990 7.12183 7.29798 7.66060 8.03903 8.29050 8.74781 9.53601 10.93882 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.011778 C = 0.010897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.215117 B = 2376.819341 C = 2568.937490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 C 0.464 3.536 4 F -0.181 7.181 5 F -0.196 7.196 6 F -0.182 7.182 7 N -0.662 5.662 8 C 0.051 3.949 9 C -0.119 4.119 10 C 0.043 3.957 11 H 0.032 0.968 12 C -0.606 4.606 13 H 0.068 0.932 14 C 0.023 3.977 15 N -0.906 5.906 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.288 1.288 20 H 0.080 0.920 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.334 0.666 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 2.638 -7.363 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 C 0.409 3.591 4 F -0.163 7.163 5 F -0.178 7.178 6 F -0.163 7.163 7 N -0.291 5.291 8 C -0.077 4.077 9 C -0.158 4.158 10 C 0.024 3.976 11 H 0.050 0.950 12 C -0.643 4.643 13 H 0.086 0.914 14 C -0.182 4.182 15 N -0.541 5.541 16 Si 0.894 3.106 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.215 1.215 20 H 0.099 0.901 21 H 0.059 0.941 22 H 0.098 0.902 23 H 0.150 0.850 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.162 2.070 -5.942 6.653 hybrid contribution -0.396 0.842 -1.404 1.685 sum -2.558 2.912 -7.346 8.306 Atomic orbital electron populations 1.22344 0.93253 1.03607 1.01665 1.22748 0.95689 0.88555 0.95906 1.20668 0.75628 0.90256 0.72533 1.93118 1.30078 1.96987 1.96094 1.93083 1.88133 1.83459 1.53131 1.93149 1.89381 1.83332 1.50472 1.62827 1.47015 1.12801 1.06454 1.22917 0.99433 0.87954 0.97387 1.22693 0.97727 1.01557 0.93829 1.19631 0.96203 0.92340 0.89391 0.95004 1.22190 0.92913 1.40016 1.09224 0.91382 1.25776 1.01472 0.94602 0.96367 1.70779 0.98987 1.43678 1.40666 0.83572 0.74300 0.76427 0.76284 1.20737 1.21353 1.21485 0.90093 0.94056 0.90168 0.85038 0.93744 0.91116 0.93510 0.90081 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 6.71 37.16 0.25 -2.55 15 2 C 0.06 1.30 0.62 -130.53 -0.08 1.22 15 3 C 0.46 9.48 2.22 37.16 0.08 9.57 15 4 F -0.18 -3.85 16.77 2.25 0.04 -3.82 15 5 F -0.20 -3.69 16.73 2.25 0.04 -3.65 15 6 F -0.18 -3.88 16.49 2.25 0.04 -3.84 15 7 N -0.66 -12.09 6.89 -96.46 -0.66 -12.75 15 8 C 0.05 0.95 7.54 -1.90 -0.01 0.93 15 9 C -0.12 -2.64 5.46 -24.88 -0.14 -2.78 15 10 C 0.04 1.04 1.80 -90.41 -0.16 0.87 15 11 H 0.03 0.85 7.14 -51.93 -0.37 0.48 15 12 C -0.61 -15.51 7.62 -34.44 -0.26 -15.77 15 13 H 0.07 1.68 4.70 -52.49 -0.25 1.43 15 14 C 0.02 0.62 5.09 -17.82 -0.09 0.53 15 15 N -0.91 -25.93 13.04 55.43 0.72 -25.21 15 16 Si 1.07 23.89 29.90 -169.99 -5.08 18.81 15 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 18 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 15 20 H 0.08 1.60 6.83 -51.93 -0.35 1.25 15 21 H 0.04 0.66 7.77 -51.93 -0.40 0.26 15 22 H 0.08 1.50 7.15 -51.93 -0.37 1.13 15 23 H 0.33 5.28 8.44 -39.29 -0.33 4.94 15 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 27 H 0.08 1.96 6.67 -51.93 -0.35 1.61 15 28 H 0.27 7.81 6.14 -40.82 -0.25 7.56 15 LS Contribution 237.46 15.07 3.58 3.58 Total: -1.00 -27.61 237.46 -4.49 -32.10 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.74 Total: 2.77 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.42 Total: -7.98 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.06 Total: -37.96 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 0.11 Total: -11.31 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.08 Total: 18.81 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.61 -4.49 -32.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.989 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds