Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.06471 * 2 1 4 4 F 1.39900 * 109.46908 * 298.79878 * 3 2 1 5 5 F 1.39904 * 109.46975 * 58.79418 * 3 2 1 6 6 F 1.39894 * 109.47076 * 178.79614 * 3 2 1 7 7 N 1.47901 * 109.91772 * 121.20383 * 2 1 3 8 8 C 1.48531 * 105.82056 * 94.02320 * 7 2 1 9 9 C 1.54943 * 103.22765 * 39.20576 * 8 7 2 10 10 C 1.53990 * 109.91642 * 238.79414 * 2 1 3 11 11 H 1.08999 * 110.39210 * 0.83385 * 10 2 1 12 12 C 1.50706 * 110.30543 * 122.95060 * 10 2 1 13 13 H 1.07999 * 120.00193 * 357.17849 * 12 10 2 14 14 C 1.37879 * 119.99398 * 177.16930 * 12 10 2 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 10 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.09003 * 109.47233 * 181.20708 * 1 2 3 21 21 H 1.09006 * 109.47018 * 301.20304 * 1 2 3 22 22 H 1.08998 * 109.47704 * 61.20274 * 1 2 3 23 23 H 1.00893 * 111.00281 * 333.50913 * 7 2 1 24 24 H 1.09001 * 110.66641 * 280.77115 * 8 7 2 25 25 H 1.09002 * 110.67298 * 157.63945 * 8 7 2 26 26 H 1.08996 * 110.72565 * 204.23057 * 9 8 7 27 27 H 1.08994 * 110.72378 * 80.94213 * 9 8 7 28 28 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4372 0.0000 4 9 1.6181 2.0932 -1.1559 5 9 1.5730 2.1097 1.1282 6 9 3.4535 1.4228 0.0277 7 7 2.0339 -0.7204 1.1894 8 6 2.2661 -2.1193 0.7472 9 6 2.8536 -1.9483 -0.6762 10 6 2.0546 -0.7501 -1.2383 11 1 1.2235 -1.1027 -1.8491 12 6 2.9555 0.1452 -2.0494 13 1 3.1094 1.1712 -1.7493 14 6 3.5835 -0.3456 -3.1745 15 7 4.3701 0.4356 -3.8820 16 14 3.3171 -2.1201 -3.6938 17 1 4.3395 -2.9832 -3.0498 18 1 1.9622 -2.5604 -3.2743 19 1 3.4374 -2.2272 -5.1700 20 1 -0.3634 -1.0275 0.0216 21 1 -0.3633 0.5324 0.8791 22 1 -0.3634 0.4950 -0.9005 23 1 1.3645 -0.6860 1.9435 24 1 1.3275 -2.6724 0.7122 25 1 2.9823 -2.6159 1.4019 26 1 2.6804 -2.8424 -1.2750 27 1 3.9172 -1.7145 -0.6290 28 1 4.8122 0.0902 -4.6733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260176587.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -132.108764 kcal Electronic energy + Delta-G solvation = -17023.332606 eV Core-core repulsion = 13852.967856 eV Total energy + Delta-G solvation = -3170.364750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.17005 -46.68946 -46.29819 -38.52495 -32.76443 -31.22186 -30.05919 -26.45417 -24.94136 -22.92130 -20.85866 -19.32236 -17.94761 -17.30502 -16.84334 -15.99247 -15.35440 -14.20001 -14.06781 -13.50696 -13.40109 -13.19841 -12.89318 -12.64473 -12.54542 -12.51887 -12.38035 -12.11624 -12.05881 -11.52743 -10.85959 -10.73222 -10.57703 -10.08299 -10.06089 -9.57881 -8.77887 -8.55575 -8.30024 -6.02633 -4.04196 3.26752 3.32993 3.36327 3.71955 4.35601 4.42107 4.76601 4.95112 5.23079 5.31492 5.54017 5.55393 5.69474 5.73781 5.82334 5.90805 6.07315 6.26884 6.46638 6.61759 6.74755 6.87123 7.36969 7.60461 7.65120 8.43787 8.97913 9.54799 11.08270 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.015446 C = 0.012383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.308662 B = 1812.283438 C = 2260.630100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 C 0.482 3.518 4 F -0.172 7.172 5 F -0.208 7.208 6 F -0.158 7.158 7 N -0.655 5.655 8 C 0.045 3.955 9 C -0.133 4.133 10 C 0.020 3.980 11 H 0.046 0.954 12 C -0.541 4.541 13 H 0.108 0.892 14 C 0.080 3.920 15 N -0.893 5.893 16 Si 0.871 3.129 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.293 1.293 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.334 0.666 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -3.323 8.196 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.028 4.028 3 C 0.427 3.573 4 F -0.153 7.153 5 F -0.190 7.190 6 F -0.139 7.139 7 N -0.284 5.284 8 C -0.084 4.084 9 C -0.171 4.171 10 C 0.001 3.999 11 H 0.064 0.936 12 C -0.578 4.578 13 H 0.125 0.875 14 C -0.122 4.122 15 N -0.531 5.531 16 Si 0.700 3.300 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.220 1.220 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.150 0.850 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.108 -3.046 8.009 10.523 hybrid contribution -0.881 -1.161 -0.484 1.536 sum -6.990 -4.207 7.525 11.099 Atomic orbital electron populations 1.22426 0.94305 1.02879 1.03350 1.22694 0.93926 0.90854 0.95284 1.19887 0.76737 0.88613 0.72100 1.93127 1.89411 1.83101 1.49695 1.93059 1.88420 1.83573 1.53923 1.93148 1.28542 1.96730 1.95516 1.62747 1.47348 1.11878 1.06405 1.23002 0.98935 0.88501 0.97936 1.23044 1.02306 0.98452 0.93303 1.20030 0.96345 0.92983 0.90541 0.93640 1.21907 1.26522 1.00260 1.09152 0.87451 1.24895 0.94535 0.96816 0.95930 1.69886 1.30152 1.35795 1.17254 0.87078 0.79018 0.86568 0.77347 1.20260 1.19316 1.21997 0.91410 0.92086 0.90478 0.84963 0.94603 0.90400 0.92746 0.89818 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 8.01 37.16 0.30 -2.39 15 2 C 0.07 1.27 0.62 -130.53 -0.08 1.19 15 3 C 0.48 10.43 2.05 37.16 0.08 10.51 15 4 F -0.17 -4.00 14.40 2.25 0.03 -3.97 15 5 F -0.21 -4.05 16.74 2.25 0.04 -4.01 15 6 F -0.16 -3.89 14.54 2.25 0.03 -3.86 15 7 N -0.65 -11.32 6.88 -96.46 -0.66 -11.99 15 8 C 0.04 0.73 7.54 -1.90 -0.01 0.72 15 9 C -0.13 -2.73 4.75 -24.87 -0.12 -2.84 15 10 C 0.02 0.46 2.03 -90.41 -0.18 0.28 15 11 H 0.05 1.03 6.82 -51.93 -0.35 0.67 15 12 C -0.54 -14.79 7.03 -34.44 -0.24 -15.03 15 13 H 0.11 3.16 3.62 -52.49 -0.19 2.97 15 14 C 0.08 2.28 5.45 -17.82 -0.10 2.19 15 15 N -0.89 -27.19 13.96 55.43 0.77 -26.42 15 16 Si 0.87 21.11 24.70 -169.99 -4.20 16.91 15 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 18 H -0.27 -6.12 6.36 56.52 0.36 -5.76 15 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.06 0.84 7.78 -51.93 -0.40 0.44 15 22 H 0.08 1.25 7.90 -51.93 -0.41 0.84 15 23 H 0.33 4.77 8.43 -39.30 -0.33 4.44 15 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.05 1.07 5.94 -51.93 -0.31 0.77 15 27 H 0.08 1.90 7.84 -51.93 -0.41 1.49 15 28 H 0.26 7.53 8.31 -40.82 -0.34 7.20 15 LS Contribution 230.34 15.07 3.47 3.47 Total: -1.00 -30.08 230.34 -3.73 -33.81 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.85 Total: 1.44 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.11 Total: -38.40 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.20 Total: 16.91 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.08 -3.73 -33.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176587.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.301 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds