Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.06948 * 2 1 4 4 F 1.39894 * 109.47786 * 183.97385 * 3 2 1 5 5 F 1.39901 * 109.47021 * 303.97987 * 3 2 1 6 6 F 1.39902 * 109.46733 * 63.97344 * 3 2 1 7 7 N 1.48123 * 109.99886 * 238.70480 * 2 1 3 8 8 C 1.48537 * 105.82215 * 266.08018 * 7 2 1 9 9 C 1.54938 * 103.22608 * 320.73365 * 8 7 2 10 10 C 1.53999 * 109.91740 * 121.20380 * 2 1 3 11 11 H 1.08994 * 110.30657 * 359.11586 * 10 2 1 12 12 C 1.50700 * 110.31064 * 237.04576 * 10 2 1 13 13 H 1.07997 * 119.99933 * 356.63885 * 12 10 2 14 14 C 1.37874 * 119.99975 * 176.63955 * 12 10 2 15 15 N 1.31515 * 119.99888 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00086 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46988 * 239.99664 * 16 14 12 19 19 H 1.48503 * 109.47400 * 119.99489 * 16 14 12 20 20 H 1.09004 * 109.47565 * 298.79562 * 1 2 3 21 21 H 1.09005 * 109.47118 * 58.79689 * 1 2 3 22 22 H 1.08999 * 109.47505 * 178.79294 * 1 2 3 23 23 H 1.00899 * 110.95505 * 26.56162 * 7 2 1 24 24 H 1.09004 * 110.66551 * 202.29989 * 8 7 2 25 25 H 1.09001 * 110.66935 * 79.17008 * 8 7 2 26 26 H 1.09000 * 110.72666 * 279.05557 * 9 8 7 27 27 H 1.09005 * 110.87450 * 155.84881 * 9 8 7 28 28 H 0.96994 * 120.00456 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 9 3.4509 1.4238 -0.0914 5 9 1.5226 2.1281 -1.0938 6 9 1.6713 2.0737 1.1853 7 7 2.0365 -0.7230 -1.1894 8 6 2.2668 -2.1217 -0.7454 9 6 2.8530 -1.9496 0.6784 10 6 2.0545 -0.7501 1.2384 11 1 1.2225 -1.1013 1.8486 12 6 2.9556 0.1451 2.0495 13 1 3.1891 1.1387 1.6966 14 6 3.4817 -0.3044 3.2420 15 7 3.1969 -1.5142 3.6719 16 14 4.5980 0.8056 4.2477 17 1 4.7604 2.1068 3.5507 18 1 5.9259 0.1600 4.4055 19 1 3.9955 1.0322 5.5859 20 1 -0.3634 0.4950 0.9006 21 1 -0.3633 0.5324 -0.8790 22 1 -0.3634 -1.0274 -0.0216 23 1 1.3679 -0.6889 -1.9443 24 1 2.9833 -2.6196 -1.3988 25 1 1.3277 -2.6739 -0.7108 26 1 3.9168 -1.7170 0.6321 27 1 2.6807 -2.8423 1.2799 28 1 2.6170 -2.0904 3.1499 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260176596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = -143.420954 kcal Electronic energy + Delta-G solvation = -17019.336875 eV Core-core repulsion = 13848.481591 eV Total energy + Delta-G solvation = -3170.855284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.24055 -46.75445 -46.38404 -38.43327 -33.13165 -31.14148 -29.09421 -26.38070 -24.71187 -23.15249 -20.44368 -19.57622 -17.89569 -17.44621 -17.17448 -15.68094 -15.44712 -14.02825 -13.84320 -13.55908 -13.43982 -13.21292 -13.01509 -12.88902 -12.66145 -12.39901 -12.35135 -12.09429 -11.40455 -11.08375 -10.92026 -10.67447 -10.49870 -10.09219 -9.95179 -9.68053 -8.40944 -8.37615 -8.23807 -6.30569 -4.04064 3.48378 3.50781 3.66892 3.69534 4.38151 4.55440 4.77066 4.96031 5.35705 5.39101 5.53413 5.59547 5.74005 5.79412 5.92950 5.94594 6.18173 6.29966 6.62404 6.75937 6.92346 7.08489 7.50072 7.65058 8.07659 8.43805 8.87596 9.63879 11.05399 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.015023 C = 0.011933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.037217 B = 1863.369396 C = 2345.789028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.061 3.939 3 C 0.482 3.518 4 F -0.165 7.165 5 F -0.208 7.208 6 F -0.172 7.172 7 N -0.656 5.656 8 C 0.040 3.960 9 C -0.112 4.112 10 C 0.042 3.958 11 H 0.038 0.962 12 C -0.615 4.615 13 H 0.080 0.920 14 C 0.026 3.974 15 N -0.914 5.914 16 Si 1.069 2.931 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.288 1.288 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.331 0.669 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 1.590 -7.664 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.032 4.032 3 C 0.427 3.573 4 F -0.146 7.146 5 F -0.190 7.190 6 F -0.153 7.153 7 N -0.284 5.284 8 C -0.088 4.088 9 C -0.151 4.151 10 C 0.023 3.977 11 H 0.056 0.944 12 C -0.652 4.652 13 H 0.098 0.902 14 C -0.179 4.179 15 N -0.551 5.551 16 Si 0.898 3.102 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.215 1.215 20 H 0.093 0.907 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.147 0.853 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.679 1.933 -6.243 7.063 hybrid contribution -1.778 -0.270 -1.373 2.263 sum -4.457 1.663 -7.616 8.979 Atomic orbital electron populations 1.22394 0.94465 1.02808 1.03048 1.22821 0.93819 0.90673 0.95885 1.19925 0.76345 0.88864 0.72120 1.93097 1.29291 1.96811 1.95364 1.93057 1.86632 1.82821 1.56510 1.93126 1.90930 1.83917 1.47340 1.62839 1.47132 1.12119 1.06343 1.23077 0.98838 0.88215 0.98703 1.22760 1.01437 0.98933 0.91977 1.19679 0.95842 0.92804 0.89387 0.94434 1.22817 1.31640 1.02924 1.07852 0.90199 1.25681 0.98090 0.98014 0.96081 1.70756 1.35299 1.07862 1.41158 0.83530 0.76054 0.75000 0.75617 1.21322 1.21437 1.21453 0.90719 0.92275 0.91465 0.85297 0.90725 0.94840 0.90873 0.92395 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.01 37.15 0.30 -2.52 15 2 C 0.06 1.23 0.63 -130.41 -0.08 1.15 15 3 C 0.48 10.47 2.06 37.16 0.08 10.55 15 4 F -0.16 -3.93 14.67 2.25 0.03 -3.90 15 5 F -0.21 -4.08 16.66 2.25 0.04 -4.04 15 6 F -0.17 -3.96 14.33 2.25 0.03 -3.92 15 7 N -0.66 -11.90 6.87 -96.32 -0.66 -12.56 15 8 C 0.04 0.70 7.54 -1.89 -0.01 0.69 15 9 C -0.11 -2.46 5.74 -24.87 -0.14 -2.60 15 10 C 0.04 0.99 2.09 -90.41 -0.19 0.80 15 11 H 0.04 0.94 7.35 -51.93 -0.38 0.56 15 12 C -0.61 -16.61 6.37 -34.44 -0.22 -16.83 15 13 H 0.08 2.20 3.39 -52.49 -0.18 2.02 15 14 C 0.03 0.71 5.36 -17.82 -0.10 0.62 15 15 N -0.91 -26.68 13.49 55.43 0.75 -25.94 15 16 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 15 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 20 H 0.07 1.29 7.97 -51.93 -0.41 0.88 15 21 H 0.06 0.87 7.71 -51.93 -0.40 0.47 15 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.33 5.05 8.44 -39.29 -0.33 4.72 15 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 26 H 0.07 1.78 7.86 -51.93 -0.41 1.37 15 27 H 0.06 1.27 7.25 -51.93 -0.38 0.89 15 28 H 0.27 7.66 5.81 -40.82 -0.24 7.42 15 LS Contribution 235.26 15.07 3.55 3.55 Total: -1.00 -29.14 235.26 -4.51 -33.65 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.79 Total: 0.68 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.37 Total: -8.15 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.09 Total: -38.49 kcal Atomic # 9 Polarization: -11.96 SS G_CDS: 0.10 Total: -11.86 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.14 -4.51 -33.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.768 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds