Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.06948 * 2 1 4 4 F 1.39894 * 109.47786 * 183.97385 * 3 2 1 5 5 F 1.39901 * 109.47021 * 303.97987 * 3 2 1 6 6 F 1.39902 * 109.46733 * 63.97344 * 3 2 1 7 7 N 1.48123 * 109.99886 * 238.70480 * 2 1 3 8 8 C 1.48537 * 105.82215 * 266.08018 * 7 2 1 9 9 C 1.54938 * 103.22608 * 320.73365 * 8 7 2 10 10 C 1.53999 * 109.91740 * 121.20380 * 2 1 3 11 11 H 1.08994 * 110.30657 * 359.11586 * 10 2 1 12 12 C 1.50700 * 110.31064 * 237.04576 * 10 2 1 13 13 H 1.07997 * 119.99933 * 356.63885 * 12 10 2 14 14 C 1.37874 * 119.99975 * 176.63955 * 12 10 2 15 15 N 1.31515 * 119.99888 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00086 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46988 * 239.99664 * 16 14 12 19 19 H 1.48503 * 109.47400 * 119.99489 * 16 14 12 20 20 H 1.09004 * 109.47565 * 298.79562 * 1 2 3 21 21 H 1.09005 * 109.47118 * 58.79689 * 1 2 3 22 22 H 1.08999 * 109.47505 * 178.79294 * 1 2 3 23 23 H 1.00899 * 110.95505 * 26.56162 * 7 2 1 24 24 H 1.09004 * 110.66551 * 202.29989 * 8 7 2 25 25 H 1.09001 * 110.66935 * 79.17008 * 8 7 2 26 26 H 1.09000 * 110.72666 * 279.05557 * 9 8 7 27 27 H 1.09005 * 110.87450 * 155.84881 * 9 8 7 28 28 H 0.96994 * 120.00456 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 9 3.4509 1.4238 -0.0914 5 9 1.5226 2.1281 -1.0938 6 9 1.6713 2.0737 1.1853 7 7 2.0365 -0.7230 -1.1894 8 6 2.2668 -2.1217 -0.7454 9 6 2.8530 -1.9496 0.6784 10 6 2.0545 -0.7501 1.2384 11 1 1.2225 -1.1013 1.8486 12 6 2.9556 0.1451 2.0495 13 1 3.1891 1.1387 1.6966 14 6 3.4817 -0.3044 3.2420 15 7 3.1969 -1.5142 3.6719 16 14 4.5980 0.8056 4.2477 17 1 4.7604 2.1068 3.5507 18 1 5.9259 0.1600 4.4055 19 1 3.9955 1.0322 5.5859 20 1 -0.3634 0.4950 0.9006 21 1 -0.3633 0.5324 -0.8790 22 1 -0.3634 -1.0274 -0.0216 23 1 1.3679 -0.6889 -1.9443 24 1 2.9833 -2.6196 -1.3988 25 1 1.3277 -2.6739 -0.7108 26 1 3.9168 -1.7170 0.6321 27 1 2.6807 -2.8423 1.2799 28 1 2.6170 -2.0904 3.1499 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260176596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = -162.998871 kcal Electronic energy + Delta-G solvation = -17020.185837 eV Core-core repulsion = 13848.481591 eV Total energy + Delta-G solvation = -3171.704246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.97674 -48.43638 -48.19043 -40.04171 -35.12827 -32.64362 -30.89491 -27.94899 -26.54060 -24.94189 -22.08755 -21.29838 -19.75688 -19.17898 -18.94628 -17.46990 -16.99356 -15.75538 -15.58555 -15.37574 -15.15103 -14.96596 -14.71668 -14.59707 -14.43491 -13.97501 -13.74744 -13.61357 -13.13388 -12.93696 -12.61934 -12.50165 -12.17740 -11.96809 -11.72325 -11.46437 -10.45909 -10.39117 -9.68238 -8.48756 -6.20632 1.52189 1.59224 1.76651 2.02888 2.58169 2.82858 3.15013 3.27291 3.36292 3.80279 3.94805 4.02682 4.26883 4.31854 4.46222 4.57644 4.72281 4.85895 5.00633 5.10856 5.20032 5.35620 5.75443 6.06440 6.28651 6.38551 6.73214 7.52041 8.88677 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.015023 C = 0.011933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.037217 B = 1863.369396 C = 2345.789028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.065 3.935 3 C 0.475 3.525 4 F -0.182 7.182 5 F -0.194 7.194 6 F -0.184 7.184 7 N -0.661 5.661 8 C 0.054 3.946 9 C -0.110 4.110 10 C 0.032 3.968 11 H 0.021 0.979 12 C -0.618 4.618 13 H 0.073 0.927 14 C -0.023 4.023 15 N -0.941 5.941 16 Si 1.102 2.898 17 H -0.281 1.281 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.063 0.937 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.353 0.647 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 1.568 -9.054 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 C 0.420 3.580 4 F -0.163 7.163 5 F -0.175 7.175 6 F -0.165 7.165 7 N -0.292 5.292 8 C -0.075 4.075 9 C -0.148 4.148 10 C 0.013 3.987 11 H 0.039 0.961 12 C -0.656 4.656 13 H 0.091 0.909 14 C -0.222 4.222 15 N -0.579 5.579 16 Si 0.927 3.073 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.171 0.829 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.462 1.912 -7.658 8.619 hybrid contribution -1.550 -0.233 -0.990 1.854 sum -5.012 1.680 -8.648 10.136 Atomic orbital electron populations 1.22369 0.91582 1.04397 1.03767 1.22679 0.95893 0.89201 0.95047 1.20270 0.75663 0.89963 0.72084 1.93057 1.30872 1.96944 1.95422 1.93076 1.86254 1.82636 1.55572 1.93095 1.90919 1.84263 1.48269 1.62757 1.48079 1.12227 1.06119 1.23025 1.00375 0.88312 0.95740 1.22540 0.99414 0.97778 0.95102 1.19640 0.95003 0.93454 0.90611 0.96082 1.23158 1.31314 1.03110 1.08007 0.90874 1.26756 0.99269 0.98554 0.97628 1.70836 1.36698 1.08656 1.41700 0.83086 0.75122 0.74051 0.75041 1.20617 1.20808 1.20615 0.91821 0.89672 0.89569 0.82856 0.88608 0.92007 0.94114 0.93156 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 8.01 71.98 0.58 -4.38 15 2 C 0.07 2.49 0.63 3.63 0.00 2.49 15 3 C 0.47 20.00 2.06 71.98 0.15 20.15 15 4 F -0.18 -8.58 14.67 44.97 0.66 -7.92 15 5 F -0.19 -7.13 16.66 44.97 0.75 -6.38 15 6 F -0.18 -8.39 14.33 44.97 0.64 -7.74 15 7 N -0.66 -21.93 6.87 -458.64 -3.15 -25.08 15 8 C 0.05 1.71 7.54 86.65 0.65 2.36 15 9 C -0.11 -4.74 5.74 31.80 0.18 -4.56 15 10 C 0.03 1.50 2.09 -10.66 -0.02 1.48 15 11 H 0.02 1.06 7.35 -2.39 -0.02 1.04 15 12 C -0.62 -33.64 6.37 25.60 0.16 -33.48 15 13 H 0.07 4.05 3.39 -2.91 -0.01 4.04 15 14 C -0.02 -1.32 5.36 84.65 0.45 -0.86 15 15 N -0.94 -55.74 13.49 21.45 0.29 -55.45 15 16 Si 1.10 52.05 29.90 68.60 2.05 54.10 15 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 20 H 0.06 2.08 7.97 -2.39 -0.02 2.06 15 21 H 0.08 2.15 7.71 -2.38 -0.02 2.13 15 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.35 9.23 8.44 -89.69 -0.76 8.47 15 24 H 0.10 2.70 8.14 -2.38 -0.02 2.68 15 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.04 1.99 7.86 -2.39 -0.02 1.97 15 27 H 0.05 2.20 7.25 -2.38 -0.02 2.19 15 28 H 0.26 15.29 5.81 -92.71 -0.54 14.75 15 Total: -1.00 -62.47 235.26 4.06 -58.40 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.67 Total: 6.87 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 2.16 Total: -16.80 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.86 Total: -80.54 kcal Atomic # 9 Polarization: -24.10 SS G_CDS: 2.05 Total: -22.04 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -62.47 4.06 -58.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260176596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.597 kcal (2) G-P(sol) polarization free energy of solvation -62.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds