Wall clock time and date at job start Mon Mar 30 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.30255 * 125.62169 * 89.99846 * 10 9 7 12 12 C 1.34475 * 108.70083 * 179.97438 * 11 10 9 13 13 C 1.50704 * 126.16450 * 180.02562 * 12 11 10 14 14 H 1.08992 * 109.86823 * 183.97289 * 13 12 11 15 15 C 1.54103 * 109.87840 * 304.97994 * 13 12 11 16 16 C 1.54808 * 104.18923 * 121.45185 * 15 13 12 17 17 C 1.55000 * 102.09075 * 20.87862 * 16 15 13 18 18 O 1.43745 * 109.87774 * 62.80602 * 13 12 11 19 19 C 1.34330 * 107.66962 * 0.02562 * 12 11 10 20 20 O 1.33974 * 125.61767 * 269.69071 * 10 9 7 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09001 * 110.48798 * 240.12780 * 15 13 12 25 25 H 1.09004 * 110.48735 * 2.77688 * 15 13 12 26 26 H 1.08998 * 110.90755 * 139.07788 * 16 15 13 27 27 H 1.09004 * 110.91045 * 262.64624 * 16 15 13 28 28 H 1.08999 * 110.61919 * 81.47769 * 17 16 15 29 29 H 1.08997 * 110.61787 * 204.31748 * 17 16 15 30 30 H 1.08000 * 126.44282 * 180.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.7232 -4.2213 1.0594 12 6 3.5588 -5.1996 0.6680 13 6 4.3412 -6.1159 1.5731 14 1 4.9865 -6.7620 0.9780 15 6 5.1920 -5.2839 2.5523 16 6 4.7101 -5.7359 3.9523 17 6 4.0665 -7.1122 3.6454 18 8 3.4396 -6.9118 2.3605 19 6 3.5703 -5.2128 -0.6752 20 8 2.7327 -4.2415 -1.0886 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 6.2509 -5.5077 2.4227 25 1 5.0058 -4.2194 2.4100 26 1 5.5512 -5.8438 4.6371 27 1 3.9717 -5.0411 4.3526 28 1 4.8299 -7.8877 3.5833 29 1 3.3240 -7.3659 4.4020 30 1 4.1397 -5.8800 -1.3054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198625.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:37 Heat of formation + Delta-G solvation = -58.038699 kcal Electronic energy + Delta-G solvation = -14908.147045 eV Core-core repulsion = 12282.850954 eV Total energy + Delta-G solvation = -2625.296091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.18896 -40.24380 -35.83534 -35.49453 -33.15958 -32.78858 -30.57126 -28.56088 -25.73022 -24.28640 -22.70318 -22.19444 -21.59152 -18.79132 -18.24554 -17.32769 -17.13621 -16.85945 -16.62788 -16.08352 -15.13883 -14.68034 -14.50696 -14.35842 -13.90067 -13.56751 -12.87661 -12.77107 -12.67159 -12.63888 -12.17959 -12.10555 -11.95169 -11.67202 -11.54866 -11.33572 -10.74397 -10.68724 -9.61623 -8.30400 -6.44822 0.59996 1.39547 1.41669 1.52660 1.70285 2.02312 2.38326 3.00837 3.03573 3.28548 3.66611 3.73414 3.97831 4.11731 4.17969 4.38333 4.52789 4.75809 4.82406 4.89905 4.93634 4.98703 5.04672 5.13944 5.20800 5.26184 5.42286 5.58855 5.92791 5.96529 6.60261 6.98718 7.23518 8.80286 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036739 B = 0.006671 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.943928 B = 4196.182479 C = 4493.592191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.114 3.886 10 C 0.216 3.784 11 N -0.510 5.510 12 C -0.046 4.046 13 C 0.162 3.838 14 H 0.120 0.880 15 C -0.145 4.145 16 C -0.149 4.149 17 C 0.043 3.957 18 O -0.399 6.399 19 C -0.078 4.078 20 O -0.216 6.216 21 H 0.272 0.728 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.110 0.890 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -12.393 3.670 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.076 3.924 10 C 0.009 3.991 11 N -0.240 5.240 12 C -0.166 4.166 13 C 0.104 3.896 14 H 0.138 0.862 15 C -0.183 4.183 16 C -0.187 4.187 17 C -0.032 4.032 18 O -0.318 6.318 19 C -0.148 4.148 20 O -0.103 6.103 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.129 0.871 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 11.440 -12.189 4.185 17.232 hybrid contribution 0.190 0.847 -0.638 1.077 sum 11.631 -11.342 3.547 16.628 Atomic orbital electron populations 1.70038 1.07543 1.28681 1.49782 1.25870 0.95894 1.03053 0.93744 0.85300 0.78327 0.77693 0.78852 1.19116 1.19863 1.19449 1.21093 0.93003 0.90492 1.53283 0.92958 1.17641 0.90239 0.85925 0.98600 1.27145 0.97754 0.96064 0.78130 1.70312 1.12999 1.09882 1.30814 1.22260 1.01783 0.98757 0.93764 1.21097 0.87961 0.89182 0.91329 0.86224 1.22951 1.00906 0.99906 0.94516 1.23105 1.01601 0.97014 0.96974 1.23784 0.98042 0.96956 0.84468 1.88921 1.44553 1.71263 1.27090 1.25553 0.98347 0.94797 0.96140 1.84480 1.47592 1.39831 1.38392 0.91904 0.94164 0.94662 0.87142 0.93166 0.87132 0.92855 0.89056 0.88546 0.72295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 2 C 0.01 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.98 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -31.60 9.09 25.60 0.23 -31.36 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.11 6.36 5.60 29.10 0.16 6.53 16 10 C 0.22 10.82 7.53 88.34 0.67 11.49 16 11 N -0.51 -24.45 11.16 -291.97 -3.26 -27.71 16 12 C -0.05 -1.74 5.83 41.26 0.24 -1.50 16 13 C 0.16 4.59 3.92 30.22 0.12 4.71 16 14 H 0.12 2.37 8.12 -2.39 -0.02 2.36 16 15 C -0.14 -3.67 6.63 31.58 0.21 -3.46 16 16 C -0.15 -3.33 7.15 31.90 0.23 -3.11 16 17 C 0.04 0.93 7.72 72.67 0.56 1.49 16 18 O -0.40 -12.48 11.17 -148.98 -1.66 -14.14 16 19 C -0.08 -2.64 12.07 66.93 0.81 -1.84 16 20 O -0.22 -9.49 10.78 -3.75 -0.04 -9.53 16 21 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.04 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.65 7.59 -2.38 -0.02 1.63 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.26 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -71.73 265.07 2.17 -69.56 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.13 Total: 5.82 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.69 Total: -15.79 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.97 Total: -82.04 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.70 Total: -23.67 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.73 2.17 -69.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198625.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.525 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds