Wall clock time and date at job start Mon Mar 30 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47354 * 299.99831 * 3 2 1 6 6 H 1.48506 * 109.47030 * 60.00166 * 3 2 1 7 7 C 1.37875 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46861 * 179.97438 * 9 7 2 11 11 N 1.30260 * 125.61801 * 90.00015 * 10 9 7 12 12 C 1.34485 * 108.69814 * 179.97438 * 11 10 9 13 13 C 1.50696 * 126.16042 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.82441 * 65.60002 * 13 12 11 15 15 C 1.54376 * 109.83595 * 304.61296 * 13 12 11 16 16 C 1.55306 * 102.25528 * 219.12807 * 15 13 12 17 17 C 1.54946 * 100.94035 * 34.13468 * 16 15 13 18 18 O 1.43240 * 109.82981 * 186.47803 * 13 12 11 19 19 C 1.34330 * 107.66950 * 359.97438 * 12 11 10 20 20 O 1.33967 * 125.62312 * 269.96191 * 10 9 7 21 21 H 0.96997 * 120.00295 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47153 * 60.00558 * 9 7 2 23 23 H 1.08993 * 109.47346 * 299.99874 * 9 7 2 24 24 H 1.09001 * 110.84509 * 337.32520 * 15 13 12 25 25 H 1.09008 * 110.84691 * 100.93943 * 15 13 12 26 26 H 1.08989 * 111.12809 * 276.21316 * 16 15 13 27 27 H 1.09003 * 111.12072 * 152.04820 * 16 15 13 28 28 H 1.09000 * 110.31329 * 204.63853 * 17 16 15 29 29 H 1.09003 * 110.31186 * 82.46454 * 17 16 15 30 30 H 1.08000 * 126.44059 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 7 2.7232 -4.2211 1.0594 12 6 3.5589 -5.1994 0.6680 13 6 4.3421 -6.1149 1.5733 14 1 3.6591 -6.7526 2.1346 15 6 5.2013 -5.2797 2.5466 16 6 6.5197 -6.0983 2.6079 17 6 6.5933 -6.6462 1.1605 18 8 5.2321 -6.9232 0.7947 19 6 3.5696 -5.2134 -0.6751 20 8 2.7368 -4.2381 -1.0884 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 5.3822 -4.2822 2.1461 25 1 4.7324 -5.2254 3.5292 26 1 6.4451 -6.9097 3.3318 27 1 7.3716 -5.4549 2.8282 28 1 7.1864 -7.5603 1.1316 29 1 7.0192 -5.8967 0.4934 30 1 4.1395 -5.8802 -1.3052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:40 Heat of formation + Delta-G solvation = -36.050258 kcal Electronic energy + Delta-G solvation = -14884.584894 eV Core-core repulsion = 12260.242293 eV Total energy + Delta-G solvation = -2624.342601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.52048 -39.31917 -34.15455 -33.48172 -32.10927 -31.11092 -29.06723 -27.01608 -23.63967 -23.21906 -21.72793 -20.49037 -19.92129 -16.98010 -16.77272 -16.37771 -15.78660 -15.38428 -14.76160 -14.55299 -13.80423 -13.37857 -13.00753 -12.75260 -12.29245 -11.82475 -11.59111 -11.50548 -11.27627 -10.91338 -10.85158 -10.78433 -10.31315 -10.09856 -9.79011 -9.63617 -9.52281 -8.55370 -7.93856 -6.17224 -4.21770 2.26317 3.25829 3.32052 3.36312 3.45187 3.64790 3.71433 4.36789 4.47733 4.71492 4.82204 5.06387 5.17938 5.19961 5.39160 5.55594 5.61599 5.67250 5.76699 5.81341 5.98992 6.22634 6.53703 6.63594 6.92548 7.05402 7.30076 7.31510 7.77291 8.05434 8.65498 8.79121 9.42076 10.93143 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040469 B = 0.006430 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.727147 B = 4353.474912 C = 4688.153022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.103 3.897 10 C 0.251 3.749 11 N -0.502 5.502 12 C -0.040 4.040 13 C 0.170 3.830 14 H 0.094 0.906 15 C -0.138 4.138 16 C -0.158 4.158 17 C 0.050 3.950 18 O -0.377 6.377 19 C -0.091 4.091 20 O -0.207 6.207 21 H 0.266 0.734 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 -11.059 2.760 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.066 3.934 10 C 0.045 3.955 11 N -0.232 5.232 12 C -0.159 4.159 13 C 0.111 3.889 14 H 0.112 0.888 15 C -0.175 4.175 16 C -0.195 4.195 17 C -0.027 4.027 18 O -0.295 6.295 19 C -0.162 4.162 20 O -0.094 6.094 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.244 -10.916 3.183 15.305 hybrid contribution 0.767 0.791 -0.581 1.245 sum 11.011 -10.125 2.602 15.183 Atomic orbital electron populations 1.69938 1.06021 1.27275 1.49654 1.24943 0.94970 0.99391 0.94653 0.86333 0.79989 0.82780 0.77765 1.19666 1.20716 1.20679 1.20903 0.93248 0.89169 1.52340 0.92173 1.18061 0.89983 0.84887 1.00501 1.27785 0.95733 0.94916 0.77055 1.70336 1.12907 1.09148 1.30799 1.21799 1.01777 0.99298 0.93014 1.20596 0.90333 0.89496 0.88436 0.88819 1.23051 0.94362 0.99803 1.00328 1.23298 0.98591 1.00247 0.97398 1.23396 0.84034 1.00475 0.94766 1.88380 1.15647 1.62074 1.63406 1.24404 0.99994 0.95815 0.96035 1.84514 1.47303 1.38810 1.38778 0.92478 0.93252 0.91687 0.89975 0.89449 0.90343 0.89898 0.89636 0.92188 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.59 9.09 -34.44 -0.31 -14.91 16 8 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 9 C 0.10 2.71 5.60 -29.03 -0.16 2.55 16 10 C 0.25 6.06 7.53 -12.94 -0.10 5.96 16 11 N -0.50 -11.48 11.29 -7.36 -0.08 -11.57 16 12 C -0.04 -0.77 6.19 -82.81 -0.51 -1.28 16 13 C 0.17 2.60 4.09 -27.16 -0.11 2.49 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.14 -1.85 6.53 -24.79 -0.16 -2.01 16 16 C -0.16 -1.57 7.16 -24.48 -0.18 -1.75 16 17 C 0.05 0.54 7.78 38.18 0.30 0.83 16 18 O -0.38 -5.32 10.36 -35.23 -0.36 -5.69 16 19 C -0.09 -1.73 11.52 29.35 0.34 -1.39 16 20 O -0.21 -4.62 10.77 5.38 0.06 -4.56 16 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 22 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 23 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 24 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 25 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 26 H 0.08 0.68 8.14 -51.94 -0.42 0.25 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.20 3.09 7.89 -52.49 -0.41 2.67 16 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -30.50 264.43 -5.43 -35.93 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -3.74 Total: -1.65 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.00 Total: -7.85 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.65 Total: -36.50 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.31 Total: -10.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.50 -5.43 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.117 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds