Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48509 * 109.47000 * 274.97697 * 3 2 1 5 5 H 1.48501 * 109.47413 * 34.97284 * 3 2 1 6 6 H 1.48497 * 109.47411 * 154.97954 * 3 2 1 7 7 C 1.40333 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00065 * 186.06224 * 7 2 1 9 9 C 1.39799 * 120.00245 * 6.06332 * 7 2 1 10 10 N 1.32812 * 125.80219 * 354.26396 * 9 7 2 11 11 C 1.33052 * 108.65323 * 179.74389 * 10 9 7 12 12 C 1.35939 * 107.98264 * 0.38165 * 11 10 9 13 13 C 1.50698 * 126.32308 * 179.89179 * 12 11 10 14 14 C 1.53179 * 109.61777 * 120.10875 * 13 12 11 15 15 C 1.53098 * 109.16190 * 176.89110 * 14 13 12 16 16 O 1.42900 * 109.41422 * 302.39310 * 15 14 13 17 17 C 1.42905 * 114.10020 * 61.15652 * 16 15 14 18 18 C 1.53084 * 109.41770 * 298.84310 * 17 16 15 19 19 O 1.34595 * 107.35609 * 359.62376 * 12 11 10 20 20 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 21 21 H 1.08008 * 126.00968 * 180.23009 * 11 10 9 22 22 H 1.08999 * 109.54267 * 359.88200 * 13 12 11 23 23 H 1.08997 * 109.51999 * 56.98394 * 14 13 12 24 24 H 1.09001 * 109.52046 * 296.79824 * 14 13 12 25 25 H 1.08996 * 109.47788 * 182.40736 * 15 14 13 26 26 H 1.09005 * 109.47861 * 62.37298 * 15 14 13 27 27 H 1.08998 * 109.47819 * 58.82772 * 17 16 15 28 28 H 1.09003 * 109.47813 * 178.84733 * 17 16 15 29 29 H 1.09001 * 109.52800 * 177.51392 * 18 17 16 30 30 H 1.09004 * 109.52216 * 297.63881 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3826 2.1071 -1.3949 5 1 1.4943 2.6201 0.8025 6 1 3.5865 1.4121 0.5921 7 6 2.0079 -1.2153 0.0005 8 1 3.0834 -1.2180 0.0993 9 6 1.3148 -2.4227 -0.1268 10 7 -0.0059 -2.5620 -0.1474 11 6 -0.2955 -3.8531 -0.2871 12 6 0.8751 -4.5417 -0.3473 13 6 1.0264 -6.0331 -0.5011 14 6 1.8104 -6.3412 -1.7805 15 6 2.0253 -7.8533 -1.8863 16 8 2.7131 -8.3179 -0.7230 17 6 2.0058 -8.0994 0.4993 18 6 1.7901 -6.5973 0.7010 19 8 1.8739 -3.6448 -0.2501 20 1 -0.4850 0.8401 -0.0004 21 1 -1.2864 -4.2794 -0.3405 22 1 0.0411 -6.4958 -0.5568 23 1 2.7764 -5.8375 -1.7459 24 1 1.2472 -5.9918 -2.6458 25 1 2.6196 -8.0748 -2.7727 26 1 1.0596 -8.3533 -1.9615 27 1 1.0399 -8.6027 0.4552 28 1 2.5860 -8.4985 1.3313 29 1 1.2123 -6.4311 1.6102 30 1 2.7557 -6.0990 0.7868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260200708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = -70.745641 kcal Electronic energy + Delta-G solvation = -15130.062597 eV Core-core repulsion = 12504.215491 eV Total energy + Delta-G solvation = -2625.847105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.06723 -40.12066 -35.96311 -35.12981 -34.44360 -32.03814 -30.85266 -28.06700 -25.12217 -24.45266 -23.04330 -21.98036 -20.78476 -19.43019 -17.66508 -17.18023 -17.00183 -16.54840 -16.08534 -15.65964 -15.54281 -14.80821 -14.68042 -14.43604 -13.54247 -13.28578 -13.12418 -13.01286 -12.64266 -12.33222 -12.28718 -11.97400 -11.78978 -11.64474 -11.25266 -11.12214 -10.61402 -10.13810 -9.31809 -8.62915 -6.67531 1.07286 1.38632 1.55582 1.57113 2.15663 2.42469 2.76997 2.99389 3.26403 3.75961 3.92083 4.01439 4.07078 4.26194 4.32478 4.40206 4.62088 4.66322 4.78223 4.83372 4.90158 4.98129 5.06104 5.16655 5.19793 5.32273 5.79508 5.98587 6.15217 6.27275 6.50717 6.71971 7.94797 8.34407 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.059342 B = 0.006327 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.729055 B = 4424.342317 C = 4566.633768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.030 3.970 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.473 4.473 8 H 0.097 0.903 9 C 0.294 3.706 10 N -0.576 5.576 11 C -0.037 4.037 12 C -0.179 4.179 13 C 0.023 3.977 14 C -0.146 4.146 15 C 0.067 3.933 16 O -0.403 6.403 17 C 0.067 3.933 18 C -0.146 4.146 19 O -0.258 6.258 20 H 0.288 0.712 21 H 0.171 0.829 22 H 0.108 0.892 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 -10.230 -1.303 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.191 4.191 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.508 4.508 8 H 0.115 0.885 9 C 0.109 3.891 10 N -0.308 5.308 11 C -0.180 4.180 12 C -0.233 4.233 13 C 0.005 3.995 14 C -0.184 4.184 15 C -0.009 4.009 16 O -0.322 6.322 17 C -0.009 4.009 18 C -0.184 4.184 19 O -0.154 6.154 20 H 0.099 0.901 21 H 0.189 0.811 22 H 0.126 0.874 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.688 -9.724 -1.247 9.948 hybrid contribution 0.245 0.520 0.006 0.574 sum 1.932 -9.204 -1.241 9.486 Atomic orbital electron populations 1.70091 1.09274 1.30366 1.30015 1.27041 0.95871 1.04395 0.91787 0.84760 0.78705 0.73788 0.79697 1.18294 1.18485 1.17447 1.18647 0.95517 0.87103 1.49554 0.88535 1.22810 0.87451 0.84155 0.94687 1.71341 1.12350 1.16749 1.30363 1.23449 0.98758 0.91018 1.04784 1.23307 0.86123 0.92984 1.20841 1.19478 1.00591 0.83890 0.95558 1.22233 1.00027 0.98423 0.97745 1.22691 0.98534 0.91201 0.88475 1.87880 1.47516 1.81326 1.15474 1.22690 0.98227 0.92977 0.87013 1.22230 1.00122 0.97762 0.98309 1.84371 1.38202 1.17797 1.75024 0.90121 0.81150 0.87373 0.93779 0.90736 0.87301 0.90707 0.90707 0.87302 0.90726 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.58 11.91 21.89 0.26 -43.32 16 2 C 0.03 1.58 5.49 85.38 0.47 2.05 16 3 Si 1.01 38.60 29.57 68.60 2.03 40.63 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.47 -27.39 9.45 23.16 0.22 -27.17 16 8 H 0.10 5.21 7.86 -2.91 -0.02 5.19 16 9 C 0.29 17.90 7.73 84.92 0.66 18.56 16 10 N -0.58 -35.08 9.45 -309.36 -2.92 -38.01 16 11 C -0.04 -1.90 11.80 83.97 0.99 -0.91 16 12 C -0.18 -8.51 5.94 25.15 0.15 -8.36 16 13 C 0.02 0.80 2.69 -11.42 -0.03 0.77 16 14 C -0.15 -4.56 5.41 30.69 0.17 -4.40 16 15 C 0.07 1.58 6.84 72.01 0.49 2.07 16 16 O -0.40 -10.83 10.77 -148.98 -1.60 -12.43 16 17 C 0.07 1.57 6.84 72.01 0.49 2.07 16 18 C -0.15 -4.56 5.40 30.68 0.17 -4.39 16 19 O -0.26 -14.51 10.82 -11.86 -0.13 -14.64 16 20 H 0.29 14.40 8.29 -92.71 -0.77 13.63 16 21 H 0.17 7.38 8.06 -2.91 -0.02 7.35 16 22 H 0.11 3.10 8.12 -2.39 -0.02 3.08 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.73 258.89 2.54 -69.19 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.13 Total: 18.28 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.77 Total: -19.70 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.66 Total: -81.33 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.73 Total: -27.07 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -71.73 2.54 -69.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260200708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.554 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds