Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34600 * 126.31895 * 2 1 4 4 C 1.34948 * 107.60209 * 180.29069 * 3 2 1 5 5 C 1.39800 * 125.79698 * 179.71509 * 4 3 2 6 6 H 1.07997 * 120.00486 * 180.02562 * 5 4 3 7 7 C 1.40345 * 119.99660 * 0.02562 * 5 4 3 8 8 N 1.30624 * 120.00422 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99690 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47411 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47061 * 120.00066 * 9 7 5 12 12 H 1.48505 * 109.46815 * 240.00215 * 9 7 5 13 13 N 1.32808 * 108.40459 * 359.73861 * 4 3 2 14 14 C 1.33065 * 108.65223 * 359.97438 * 13 4 3 15 15 C 1.50695 * 126.01076 * 179.97438 * 14 13 4 16 16 H 1.09000 * 109.89748 * 164.50447 * 15 14 13 17 17 C 1.54377 * 109.83610 * 285.44336 * 15 14 13 18 18 C 1.55300 * 102.25502 * 140.86829 * 17 15 14 19 19 C 1.54940 * 100.94415 * 325.86750 * 18 17 15 20 20 O 1.43245 * 109.83060 * 43.57627 * 15 14 13 21 21 H 1.08999 * 109.47494 * 270.15052 * 1 2 3 22 22 H 1.09004 * 109.46634 * 30.15207 * 1 2 3 23 23 H 1.08998 * 109.47006 * 150.14937 * 1 2 3 24 24 H 0.96996 * 119.99890 * 179.97438 * 8 7 5 25 25 H 1.09006 * 110.84785 * 259.06560 * 17 15 14 26 26 H 1.09007 * 110.84761 * 22.67502 * 17 15 14 27 27 H 1.09007 * 111.12449 * 83.79023 * 18 17 15 28 28 H 1.09006 * 111.12576 * 207.94720 * 18 17 15 29 29 H 1.08997 * 110.31031 * 277.52940 * 19 18 17 30 30 H 1.08999 * 110.30948 * 155.35829 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3043 1.0845 0.0000 4 6 3.5824 0.6515 -0.0065 5 6 4.7207 1.4630 -0.0144 6 1 5.7033 1.0150 -0.0196 7 6 4.5864 2.8600 -0.0155 8 7 3.3979 3.4020 -0.0086 9 14 6.1074 3.9445 -0.0267 10 1 7.3232 3.0919 -0.0326 11 1 6.0963 4.8001 -1.2403 12 1 6.1118 4.8035 1.1847 13 7 3.5751 -0.6766 -0.0047 14 6 2.3121 -1.0953 0.0034 15 6 1.8547 -2.5311 0.0075 16 1 0.8027 -2.5845 0.2878 17 6 2.0555 -3.1489 -1.3930 18 6 2.5445 -4.5833 -1.0535 19 6 3.3639 -4.3176 0.2344 20 8 2.6430 -3.2896 0.9322 21 1 -0.3634 0.0027 1.0276 22 1 -0.3633 0.8887 -0.5162 23 1 -0.3633 -0.8913 -0.5115 24 1 3.3052 4.3676 -0.0090 25 1 1.1144 -3.1795 -1.9421 26 1 2.8147 -2.6025 -1.9527 27 1 1.7039 -5.2480 -0.8543 28 1 3.1776 -4.9806 -1.8470 29 1 4.3658 -3.9715 -0.0193 30 1 3.4173 -5.2211 0.8419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260220504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -48.390483 kcal Electronic energy + Delta-G solvation = -15301.224655 eV Core-core repulsion = 12676.346942 eV Total energy + Delta-G solvation = -2624.877713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02466 -38.69931 -33.79801 -32.81641 -31.69632 -31.19587 -28.56405 -27.61118 -24.10974 -22.05329 -21.28652 -20.23049 -19.20246 -17.50659 -16.07114 -15.56071 -15.20572 -14.73144 -14.47444 -13.66072 -13.32409 -13.00320 -12.76088 -12.30170 -12.14834 -11.73065 -11.38156 -11.33809 -11.24999 -10.98701 -10.91291 -10.55299 -10.48640 -10.32961 -9.56043 -9.26933 -8.97838 -8.43602 -7.24693 -6.88914 -4.60875 2.86487 3.03943 3.11489 3.24739 3.86013 4.01315 4.58182 4.75557 4.89003 5.15248 5.24689 5.34508 5.59124 5.63940 5.86583 5.95104 5.99927 6.03161 6.16858 6.25385 6.26643 6.35044 6.53165 6.68842 7.01126 7.08309 7.55538 7.76383 7.97651 8.24583 8.56210 8.73113 9.89724 10.14381 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.039535 B = 0.007942 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.060599 B = 3524.659359 C = 4018.203139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.185 4.185 3 O -0.181 6.181 4 C 0.345 3.655 5 C -0.430 4.430 6 H 0.110 0.890 7 C 0.070 3.930 8 N -0.778 5.778 9 Si 0.930 3.070 10 H -0.257 1.257 11 H -0.271 1.271 12 H -0.271 1.271 13 N -0.594 5.594 14 C 0.006 3.994 15 C 0.172 3.828 16 H 0.080 0.920 17 C -0.142 4.142 18 C -0.155 4.155 19 C 0.054 3.946 20 O -0.367 6.367 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.285 0.715 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -7.247 -2.283 8.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.241 4.241 3 O -0.073 6.073 4 C 0.160 3.840 5 C -0.465 4.465 6 H 0.127 0.873 7 C -0.152 4.152 8 N -0.406 5.406 9 Si 0.754 3.246 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.196 1.196 13 N -0.327 5.327 14 C -0.120 4.120 15 C 0.113 3.887 16 H 0.098 0.902 17 C -0.180 4.180 18 C -0.193 4.193 19 C -0.022 4.022 20 O -0.286 6.286 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.551 -7.363 -2.062 8.061 hybrid contribution -0.068 1.021 -0.228 1.048 sum -2.619 -6.342 -2.290 7.234 Atomic orbital electron populations 1.19714 0.87518 1.01378 1.00932 1.22517 0.93518 0.85880 1.22221 1.84794 1.17240 1.32434 1.72827 1.22074 0.82552 0.87484 0.91902 1.18407 0.91214 0.89288 1.47630 0.87252 1.26106 0.98101 0.98870 0.92153 1.69719 1.23974 1.13402 1.33487 0.85892 0.80868 0.79267 0.78622 1.18018 1.19630 1.19604 1.70763 1.19901 1.09039 1.32971 1.21200 0.90950 0.94127 1.05725 1.20732 0.93502 0.86197 0.88239 0.90195 1.23117 1.02324 0.95006 0.97540 1.23253 1.00227 0.97256 0.98554 1.23273 0.95991 0.90705 0.92280 1.88451 1.61823 1.46072 1.32243 0.92729 0.92289 0.91912 0.90457 0.90618 0.89889 0.90906 0.90383 0.92083 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.18 -4.70 7.42 -35.13 -0.26 -4.96 16 3 O -0.18 -5.33 9.06 3.09 0.03 -5.30 16 4 C 0.34 10.28 7.66 -16.55 -0.13 10.15 16 5 C -0.43 -12.13 9.45 -38.21 -0.36 -12.50 16 6 H 0.11 2.95 7.85 -52.49 -0.41 2.54 16 7 C 0.07 1.80 5.50 -17.27 -0.10 1.71 16 8 N -0.78 -21.01 11.98 55.57 0.67 -20.34 16 9 Si 0.93 18.87 29.56 -169.99 -5.03 13.85 16 10 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 11 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 N -0.59 -16.99 11.34 -9.65 -0.11 -17.10 16 14 C 0.01 0.14 5.86 -82.89 -0.49 -0.34 16 15 C 0.17 3.45 3.84 -27.16 -0.10 3.35 16 16 H 0.08 1.43 7.24 -51.93 -0.38 1.06 16 17 C -0.14 -2.36 6.53 -24.79 -0.16 -2.52 16 18 C -0.16 -2.11 7.15 -24.49 -0.18 -2.29 16 19 C 0.05 0.88 7.78 38.18 0.30 1.18 16 20 O -0.37 -7.68 11.00 -35.23 -0.39 -8.07 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.06 1.00 7.49 -51.93 -0.39 0.61 16 24 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -32.66 261.18 -5.68 -38.34 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.68 Total: 1.26 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.11 Total: -6.58 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.56 Total: -37.44 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.36 Total: -13.37 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.66 -5.68 -38.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.048 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds