Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34600 * 126.31895 * 2 1 4 4 C 1.34948 * 107.60209 * 180.29069 * 3 2 1 5 5 C 1.39800 * 125.79698 * 179.71509 * 4 3 2 6 6 H 1.07997 * 120.00486 * 180.02562 * 5 4 3 7 7 C 1.40345 * 119.99660 * 0.02562 * 5 4 3 8 8 N 1.30624 * 120.00422 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99690 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47411 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47061 * 120.00066 * 9 7 5 12 12 H 1.48505 * 109.46815 * 240.00215 * 9 7 5 13 13 N 1.32808 * 108.40459 * 359.73861 * 4 3 2 14 14 C 1.33065 * 108.65223 * 359.97438 * 13 4 3 15 15 C 1.50695 * 126.01076 * 179.97438 * 14 13 4 16 16 H 1.09000 * 109.89748 * 164.50447 * 15 14 13 17 17 C 1.54377 * 109.83610 * 285.44336 * 15 14 13 18 18 C 1.55300 * 102.25502 * 140.86829 * 17 15 14 19 19 C 1.54940 * 100.94415 * 325.86750 * 18 17 15 20 20 O 1.43245 * 109.83060 * 43.57627 * 15 14 13 21 21 H 1.08999 * 109.47494 * 270.15052 * 1 2 3 22 22 H 1.09004 * 109.46634 * 30.15207 * 1 2 3 23 23 H 1.08998 * 109.47006 * 150.14937 * 1 2 3 24 24 H 0.96996 * 119.99890 * 179.97438 * 8 7 5 25 25 H 1.09006 * 110.84785 * 259.06560 * 17 15 14 26 26 H 1.09007 * 110.84761 * 22.67502 * 17 15 14 27 27 H 1.09007 * 111.12449 * 83.79023 * 18 17 15 28 28 H 1.09006 * 111.12576 * 207.94720 * 18 17 15 29 29 H 1.08997 * 110.31031 * 277.52940 * 19 18 17 30 30 H 1.08999 * 110.30948 * 155.35829 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3043 1.0845 0.0000 4 6 3.5824 0.6515 -0.0065 5 6 4.7207 1.4630 -0.0144 6 1 5.7033 1.0150 -0.0196 7 6 4.5864 2.8600 -0.0155 8 7 3.3979 3.4020 -0.0086 9 14 6.1074 3.9445 -0.0267 10 1 7.3232 3.0919 -0.0326 11 1 6.0963 4.8001 -1.2403 12 1 6.1118 4.8035 1.1847 13 7 3.5751 -0.6766 -0.0047 14 6 2.3121 -1.0953 0.0034 15 6 1.8547 -2.5311 0.0075 16 1 0.8027 -2.5845 0.2878 17 6 2.0555 -3.1489 -1.3930 18 6 2.5445 -4.5833 -1.0535 19 6 3.3639 -4.3176 0.2344 20 8 2.6430 -3.2896 0.9322 21 1 -0.3634 0.0027 1.0276 22 1 -0.3633 0.8887 -0.5162 23 1 -0.3633 -0.8913 -0.5115 24 1 3.3052 4.3676 -0.0090 25 1 1.1144 -3.1795 -1.9421 26 1 2.8147 -2.6025 -1.9527 27 1 1.7039 -5.2480 -0.8543 28 1 3.1776 -4.9806 -1.8470 29 1 4.3658 -3.9715 -0.0193 30 1 3.4173 -5.2211 0.8419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260220504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = -73.540069 kcal Electronic energy + Delta-G solvation = -15302.315223 eV Core-core repulsion = 12676.346942 eV Total energy + Delta-G solvation = -2625.968281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05648 -40.14752 -35.79480 -34.83012 -33.25444 -32.79301 -30.08118 -29.54488 -25.87135 -23.69477 -22.56120 -22.21399 -21.11839 -19.44922 -17.49400 -17.17602 -17.01458 -16.71783 -16.21285 -15.33724 -15.01327 -14.42205 -14.26532 -13.88840 -13.71557 -13.37535 -13.01521 -12.98069 -12.83270 -12.64930 -12.41969 -12.08159 -11.98141 -11.71197 -11.49394 -11.18344 -10.66139 -10.42992 -9.24721 -8.85085 -6.70715 1.05926 1.36335 1.49298 1.56394 2.13626 2.15623 2.87011 3.05370 3.30664 3.57795 3.80970 3.96491 4.18762 4.24282 4.44241 4.49071 4.70523 4.78789 4.82708 4.85209 4.88807 4.97927 5.02130 5.06402 5.15826 5.32755 5.84545 5.92579 6.12926 6.21127 6.52605 6.63291 7.83047 8.20608 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.039535 B = 0.007942 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.060599 B = 3524.659359 C = 4018.203139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.208 4.208 3 O -0.209 6.209 4 C 0.306 3.694 5 C -0.465 4.465 6 H 0.108 0.892 7 C 0.027 3.973 8 N -0.813 5.813 9 Si 1.015 2.985 10 H -0.253 1.253 11 H -0.256 1.256 12 H -0.258 1.258 13 N -0.623 5.623 14 C -0.011 4.011 15 C 0.166 3.834 16 H 0.107 0.893 17 C -0.139 4.139 18 C -0.136 4.136 19 C 0.042 3.958 20 O -0.399 6.399 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.297 0.703 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -8.024 -2.737 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.263 4.263 3 O -0.102 6.102 4 C 0.121 3.879 5 C -0.500 4.500 6 H 0.125 0.875 7 C -0.192 4.192 8 N -0.441 5.441 9 Si 0.833 3.167 10 H -0.176 1.176 11 H -0.180 1.180 12 H -0.182 1.182 13 N -0.357 5.357 14 C -0.135 4.135 15 C 0.108 3.892 16 H 0.125 0.875 17 C -0.177 4.177 18 C -0.174 4.174 19 C -0.034 4.034 20 O -0.318 6.318 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.202 -8.168 -2.519 9.128 hybrid contribution 0.071 1.202 -0.066 1.206 sum -3.131 -6.966 -2.584 8.063 Atomic orbital electron populations 1.19932 0.83199 1.03410 1.02502 1.23735 0.96060 0.85111 1.21366 1.84744 1.17638 1.34444 1.73419 1.22650 0.83396 0.88390 0.93423 1.18788 0.90942 0.90956 1.49309 0.87455 1.27226 1.02027 0.99359 0.90563 1.69772 1.26525 1.14620 1.33190 0.84677 0.75726 0.76829 0.79510 1.17597 1.18008 1.18221 1.70737 1.22164 1.08820 1.34012 1.22100 0.89789 0.96985 1.04652 1.21038 0.94368 0.83460 0.90345 0.87506 1.23092 1.03074 0.96196 0.95349 1.23241 1.01022 0.95764 0.97340 1.23541 0.94923 0.90590 0.94341 1.88409 1.62380 1.47235 1.33781 0.91204 0.91909 0.88177 0.89197 0.87295 0.93366 0.87594 0.88297 0.94576 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.21 -10.72 7.42 25.15 0.19 -10.54 16 3 O -0.21 -12.85 9.06 -11.84 -0.11 -12.96 16 4 C 0.31 19.18 7.66 84.92 0.65 19.83 16 5 C -0.46 -27.41 9.45 23.16 0.22 -27.19 16 6 H 0.11 6.09 7.85 -2.91 -0.02 6.07 16 7 C 0.03 1.41 5.50 85.39 0.47 1.88 16 8 N -0.81 -44.83 11.98 21.90 0.26 -44.57 16 9 Si 1.02 38.68 29.56 68.60 2.03 40.71 16 10 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 11 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 N -0.62 -37.29 11.34 -297.42 -3.37 -40.66 16 14 C -0.01 -0.55 5.86 41.83 0.25 -0.30 16 15 C 0.17 6.50 3.84 30.31 0.12 6.62 16 16 H 0.11 3.54 7.24 -2.39 -0.02 3.52 16 17 C -0.14 -4.36 6.53 31.85 0.21 -4.16 16 18 C -0.14 -3.26 7.15 32.05 0.23 -3.03 16 19 C 0.04 1.31 7.78 72.65 0.56 1.88 16 20 O -0.40 -16.46 11.00 -148.98 -1.64 -18.10 16 21 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 22 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 23 H 0.10 2.87 7.49 -2.39 -0.02 2.85 16 24 H 0.30 14.37 8.29 -92.71 -0.77 13.60 16 25 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 26 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16 27 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -75.84 261.18 1.91 -73.93 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.14 Total: 17.19 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.60 Total: -15.54 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.11 Total: -85.23 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.75 Total: -31.06 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -75.84 1.91 -73.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.391 kcal (2) G-P(sol) polarization free energy of solvation -75.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds