Wall clock time and date at job start Mon Mar 30 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34809 * 117.00167 * 2 1 4 4 O 1.21561 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.47057 * 120.00208 * 179.97438 * 3 2 1 6 6 C 1.46900 * 126.88395 * 359.97438 * 5 3 2 7 7 C 1.34384 * 106.55603 * 180.02562 * 6 5 3 8 8 C 1.50702 * 125.54491 * 179.97438 * 7 6 5 9 9 N 1.36907 * 108.90193 * 0.22743 * 7 6 5 10 10 C 1.37391 * 124.96618 * 179.74623 * 9 7 6 11 11 H 1.08004 * 120.00096 * 39.20535 * 10 9 7 12 12 C 1.39006 * 120.00520 * 219.19869 * 10 9 7 13 13 N 1.31292 * 119.99453 * 20.85385 * 12 10 9 14 14 Si 1.86791 * 120.00564 * 200.85259 * 12 10 9 15 15 H 1.48501 * 109.47284 * 60.00139 * 14 12 10 16 16 H 1.48496 * 109.47475 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47190 * 300.00247 * 14 12 10 18 18 C 1.35768 * 110.06715 * 359.61717 * 9 7 6 19 19 C 1.50702 * 125.87991 * 180.15507 * 18 9 7 20 20 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47385 * 299.99508 * 1 2 3 22 22 H 1.09004 * 109.46976 * 59.99895 * 1 2 3 23 23 H 1.07997 * 126.72532 * 0.02562 * 6 5 3 24 24 H 1.08999 * 109.47249 * 91.83208 * 8 7 6 25 25 H 1.09000 * 109.47066 * 331.82251 * 8 7 6 26 26 H 1.09006 * 109.46629 * 211.82589 * 8 7 6 27 27 H 0.97008 * 119.99834 * 174.93731 * 13 12 10 28 28 H 1.09007 * 109.46969 * 270.28721 * 19 18 9 29 29 H 1.08996 * 109.47173 * 30.28459 * 19 18 9 30 30 H 1.09003 * 109.47080 * 150.29354 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5325 1.2781 0.0006 6 6 4.4745 0.1509 0.0017 7 6 5.7085 0.6831 0.0025 8 6 6.9985 -0.0960 0.0043 9 7 5.6028 2.0480 0.0070 10 6 6.6646 2.9199 0.0140 11 1 7.5440 2.7047 -0.5748 12 6 6.6070 4.0793 0.7788 13 7 5.7674 4.1609 1.7848 14 14 7.7241 5.5209 0.3753 15 1 7.4486 5.9890 -1.0068 16 1 7.4702 6.6271 1.3329 17 1 9.1422 5.0926 0.4794 18 6 4.2954 2.4141 0.0008 19 6 3.7741 3.8281 -0.0002 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.2244 -0.8997 0.0019 24 1 7.3275 -0.2565 -1.0224 25 1 6.8408 -1.0589 0.4901 26 1 7.7604 0.4642 0.5465 27 1 5.7779 4.9395 2.3634 28 1 3.6480 4.1695 1.0273 29 1 4.4837 4.4766 -0.5141 30 1 2.8135 3.8608 -0.5144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:29 Heat of formation + Delta-G solvation = -53.871090 kcal Electronic energy + Delta-G solvation = -15386.123407 eV Core-core repulsion = 12761.008037 eV Total energy + Delta-G solvation = -2625.115370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.08184 -38.91864 -35.42250 -33.63703 -31.34782 -30.29138 -28.01564 -27.32647 -25.05832 -23.67688 -21.50592 -19.13472 -18.95576 -16.56658 -16.30412 -15.49463 -15.40859 -15.03613 -14.09832 -13.76376 -12.95448 -12.67526 -12.54400 -12.26302 -12.14974 -11.83148 -11.54162 -11.39596 -11.18963 -11.13286 -11.07345 -10.68845 -10.42434 -10.16900 -10.08223 -9.38802 -9.02769 -7.59873 -6.79037 -6.67361 -4.55036 2.69956 2.94848 3.03955 3.05641 3.60154 3.69557 3.87217 4.46876 4.70720 4.90782 5.53896 5.60246 5.76858 5.98345 6.23588 6.29998 6.36552 6.39314 6.59807 6.71212 6.79424 6.93957 7.05607 7.13060 7.20623 7.43810 7.53978 7.81508 8.16782 8.41489 8.86764 8.98246 9.43304 10.23363 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.009427 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.105207 B = 2969.322976 C = 3616.469440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.541 3.459 4 O -0.546 6.546 5 C -0.286 4.286 6 C -0.173 4.173 7 C -0.033 4.033 8 C -0.065 4.065 9 N -0.241 5.241 10 C -0.370 4.370 11 H 0.106 0.894 12 C 0.059 3.941 13 N -0.820 5.820 14 Si 0.927 3.073 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.267 1.267 18 C 0.125 3.875 19 C -0.065 4.065 20 H 0.090 0.910 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.126 0.874 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.282 0.718 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -3.608 -2.168 4.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.393 3.607 4 O -0.439 6.439 5 C -0.293 4.293 6 C -0.196 4.196 7 C -0.143 4.143 8 C -0.123 4.123 9 N 0.099 4.901 10 C -0.497 4.497 11 H 0.123 0.877 12 C -0.154 4.154 13 N -0.449 5.449 14 Si 0.751 3.249 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.192 1.192 18 C 0.000 4.000 19 C -0.122 4.122 20 H 0.108 0.892 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.143 0.857 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.661 -2.999 -2.010 3.974 hybrid contribution 0.285 0.668 0.068 0.730 sum -1.376 -2.331 -1.942 3.331 Atomic orbital electron populations 1.23025 0.78426 1.02287 1.01776 1.86603 1.21529 1.34305 1.85643 1.20431 0.88350 0.80168 0.71791 1.90707 1.67012 1.35868 1.50287 1.18566 0.87293 0.93961 1.29500 1.21306 0.90738 0.96474 1.11115 1.20168 0.95630 0.84103 1.14402 1.20025 0.93649 0.97863 1.00746 1.39802 1.04244 1.03650 1.42452 1.19677 0.97576 1.01456 1.30999 0.87664 1.25570 0.97003 0.99292 0.93573 1.69959 1.33823 1.29793 1.11289 0.85995 0.79937 0.79695 0.79253 1.18955 1.20203 1.19203 1.20102 0.83123 0.94473 1.02338 1.20344 0.98713 0.90476 1.02679 0.89199 0.92683 0.92732 0.85655 0.92968 0.92053 0.91865 0.90724 0.90134 0.93057 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.57 101.05 1.07 1.66 16 2 O -0.36 -7.38 10.46 -40.79 -0.43 -7.80 16 3 C 0.54 12.82 7.95 34.31 0.27 13.09 16 4 O -0.55 -13.52 14.60 -19.31 -0.28 -13.80 16 5 C -0.29 -7.23 6.29 -103.32 -0.65 -7.88 16 6 C -0.17 -4.04 10.88 -37.44 -0.41 -4.45 16 7 C -0.03 -0.78 6.82 -81.69 -0.56 -1.34 16 8 C -0.07 -1.23 10.02 36.01 0.36 -0.87 16 9 N -0.24 -6.29 2.75 -53.49 -0.15 -6.44 16 10 C -0.37 -9.41 8.95 -14.78 -0.13 -9.54 16 11 H 0.11 2.53 7.91 -52.48 -0.42 2.11 16 12 C 0.06 1.44 3.87 -17.50 -0.07 1.37 16 13 N -0.82 -21.17 10.58 55.50 0.59 -20.58 16 14 Si 0.93 18.60 29.60 -169.99 -5.03 13.56 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 C 0.13 3.31 6.33 -81.36 -0.51 2.79 16 19 C -0.07 -1.61 7.96 36.01 0.29 -1.33 16 20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 27 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.08 2.07 6.87 -51.92 -0.36 1.71 16 29 H 0.05 1.24 6.98 -51.93 -0.36 0.88 16 30 H 0.06 1.51 6.47 -51.93 -0.34 1.18 16 LS Contribution 262.05 15.07 3.95 3.95 Total: -1.00 -29.47 262.05 -5.24 -34.71 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.55 Total: 2.88 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.34 Total: -6.48 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.44 Total: -27.02 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.71 Total: -21.60 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.47 -5.24 -34.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.161 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds