Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33333 * 126.45965 * 2 1 4 4 C 1.30798 * 109.25374 * 180.10618 * 3 2 1 5 5 C 1.50703 * 125.15137 * 179.88569 * 4 3 2 6 6 H 1.09007 * 110.98393 * 183.89434 * 5 4 3 7 7 C 1.55300 * 111.12413 * 59.70127 * 5 4 3 8 8 C 1.54377 * 102.25502 * 207.90354 * 7 5 4 9 9 O 1.43245 * 107.58529 * 21.35358 * 8 7 5 10 10 C 1.43641 * 109.97106 * 1.71442 * 9 8 7 11 11 O 1.34018 * 109.69187 * 359.62652 * 4 3 2 12 12 C 1.35480 * 107.71660 * 0.22666 * 11 4 3 13 13 C 1.39847 * 126.87252 * 179.97438 * 12 11 4 14 14 H 1.07996 * 119.99908 * 180.02562 * 13 12 11 15 15 C 1.40164 * 120.00108 * 0.02562 * 13 12 11 16 16 N 1.30801 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00102 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46898 * 90.00432 * 17 15 13 19 19 H 1.48507 * 109.47035 * 210.00100 * 17 15 13 20 20 H 1.48495 * 109.47192 * 330.00012 * 17 15 13 21 21 H 1.09003 * 109.47404 * 270.30685 * 1 2 3 22 22 H 1.09005 * 109.47267 * 30.30487 * 1 2 3 23 23 H 1.09001 * 109.47145 * 150.30442 * 1 2 3 24 24 H 1.09006 * 110.85287 * 89.70980 * 7 5 4 25 25 H 1.09007 * 110.84948 * 326.09548 * 7 5 4 26 26 H 1.09000 * 109.83189 * 261.84669 * 8 7 5 27 27 H 1.08997 * 109.83895 * 140.86726 * 8 7 5 28 28 H 1.08997 * 110.30942 * 94.48681 * 10 9 8 29 29 H 1.08999 * 110.30828 * 216.65652 * 10 9 8 30 30 H 0.97004 * 119.99938 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0724 0.0000 4 6 3.5487 0.6855 -0.0023 5 6 4.7421 1.6059 -0.0055 6 1 5.6712 1.0402 -0.0761 7 6 4.7415 2.5274 1.2445 8 6 5.5002 3.7715 0.7348 9 8 5.4195 3.7718 -0.6953 10 6 4.6379 2.6529 -1.1429 11 8 3.6069 -0.6534 0.0044 12 6 2.3354 -1.1213 0.0060 13 6 1.9343 -2.4610 0.0119 14 1 0.8834 -2.7100 0.0122 15 6 2.8961 -3.4806 0.0175 16 7 4.1689 -3.1789 0.0176 17 14 2.3603 -5.2700 0.0247 18 1 2.2200 -5.7503 -1.3735 19 1 3.3791 -6.0890 0.7295 20 1 1.0560 -5.3934 0.7237 21 1 -0.3634 0.0055 1.0277 22 1 -0.3634 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5091 24 1 5.2752 2.0594 2.0718 25 1 3.7233 2.7861 1.5353 26 1 6.5436 3.7215 1.0462 27 1 5.0376 4.6752 1.1315 28 1 3.5996 2.9508 -1.2889 29 1 5.0501 2.2492 -2.0676 30 1 4.8345 -3.8845 0.0210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283391.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = -55.196208 kcal Electronic energy + Delta-G solvation = -15210.017445 eV Core-core repulsion = 12584.844613 eV Total energy + Delta-G solvation = -2625.172831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05937 -38.79927 -34.01619 -33.18736 -32.37990 -29.94886 -28.73967 -27.42389 -24.33799 -22.24282 -21.64979 -19.65752 -19.33578 -17.46038 -16.23268 -15.87896 -15.24035 -14.69184 -14.37630 -14.13691 -13.36414 -13.09402 -12.74520 -12.07657 -11.93779 -11.89065 -11.48904 -11.36108 -11.10506 -11.00508 -10.91174 -10.74104 -10.50300 -10.26629 -9.65462 -9.25604 -9.19234 -8.80931 -7.38010 -7.03396 -4.58511 2.75765 2.93788 2.98450 3.33146 3.73346 4.02356 4.16876 4.58296 4.99999 5.04800 5.34243 5.38076 5.60907 5.67184 5.71071 5.97039 6.12100 6.27790 6.34869 6.35150 6.58885 6.68554 6.69973 6.81362 6.92229 7.23670 7.28955 7.59058 8.02736 8.20683 8.43562 8.50199 9.64540 9.95594 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.007718 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.098258 B = 3627.158169 C = 4097.336426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.211 4.211 3 N -0.442 5.442 4 C 0.024 3.976 5 C 0.006 3.994 6 H 0.093 0.907 7 C -0.145 4.145 8 C 0.054 3.946 9 O -0.390 6.390 10 C 0.063 3.937 11 O -0.186 6.186 12 C 0.184 3.816 13 C -0.428 4.428 14 H 0.108 0.892 15 C 0.065 3.935 16 N -0.770 5.770 17 Si 0.926 3.074 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.257 1.257 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 3.077 1.018 3.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.337 4.337 3 N -0.171 5.171 4 C -0.176 4.176 5 C -0.014 4.014 6 H 0.111 0.889 7 C -0.183 4.183 8 C -0.022 4.022 9 O -0.310 6.310 10 C -0.013 4.013 11 O -0.074 6.074 12 C 0.128 3.872 13 C -0.458 4.458 14 H 0.126 0.874 15 C -0.157 4.157 16 N -0.396 5.396 17 Si 0.749 3.251 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.181 1.181 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.549 3.808 0.893 4.207 hybrid contribution 0.025 -1.801 0.221 1.815 sum 1.573 2.007 1.115 2.783 Atomic orbital electron populations 1.19403 0.89317 0.99997 0.99346 1.21290 0.95584 0.87669 1.29157 1.69138 1.00633 1.33127 1.14184 1.23929 0.92932 0.80924 1.19804 1.20472 0.93486 0.92565 0.94892 0.88896 1.23180 1.02187 0.94849 0.98131 1.23068 0.99711 0.97961 0.81502 1.88337 1.73621 1.48426 1.20585 1.23435 0.96427 0.84778 0.96686 1.84711 1.29731 1.20143 1.72800 1.20347 0.79560 0.94300 0.92986 1.18775 0.95236 0.86626 1.45128 0.87384 1.26204 0.94431 1.02827 0.92260 1.69771 1.01379 1.36373 1.32029 0.85998 0.79798 0.79723 0.79567 1.18985 1.19861 1.18088 0.94407 0.93774 0.92962 0.90262 0.89619 0.91652 0.91750 0.90825 0.89881 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.49 10.23 36.00 0.37 -0.13 16 2 C -0.21 -5.49 7.27 -81.50 -0.59 -6.08 16 3 N -0.44 -11.34 10.82 -6.32 -0.07 -11.41 16 4 C 0.02 0.60 7.01 -12.72 -0.09 0.51 16 5 C 0.01 0.11 3.63 -89.53 -0.32 -0.21 16 6 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 7 C -0.15 -2.45 6.49 -24.79 -0.16 -2.61 16 8 C 0.05 0.80 7.79 37.88 0.30 1.09 16 9 O -0.39 -6.79 11.36 -35.23 -0.40 -7.19 16 10 C 0.06 1.16 7.25 38.18 0.28 1.44 16 11 O -0.19 -5.23 9.17 3.10 0.03 -5.20 16 12 C 0.18 5.09 6.83 -38.54 -0.26 4.83 16 13 C -0.43 -11.16 9.09 -38.26 -0.35 -11.51 16 14 H 0.11 2.59 7.35 -52.49 -0.39 2.20 16 15 C 0.06 1.59 5.50 -17.27 -0.09 1.49 16 16 N -0.77 -19.95 12.06 55.56 0.67 -19.28 16 17 Si 0.93 17.84 29.56 -169.99 -5.03 12.81 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 1.05 7.60 -51.93 -0.39 0.65 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.56 7.95 -51.93 -0.41 1.15 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.44 7.76 -51.93 -0.40 1.04 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -29.68 261.32 -5.48 -35.16 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.69 Total: 2.35 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.93 Total: -11.18 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.60 Total: -30.69 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.37 Total: -12.39 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.68 -5.48 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283391.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.036 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds