Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33333 * 126.45965 * 2 1 4 4 C 1.30798 * 109.25374 * 180.10618 * 3 2 1 5 5 C 1.50703 * 125.15137 * 179.88569 * 4 3 2 6 6 H 1.09007 * 110.98393 * 183.89434 * 5 4 3 7 7 C 1.55300 * 111.12413 * 59.70127 * 5 4 3 8 8 C 1.54377 * 102.25502 * 207.90354 * 7 5 4 9 9 O 1.43245 * 107.58529 * 21.35358 * 8 7 5 10 10 C 1.43641 * 109.97106 * 1.71442 * 9 8 7 11 11 O 1.34018 * 109.69187 * 359.62652 * 4 3 2 12 12 C 1.35480 * 107.71660 * 0.22666 * 11 4 3 13 13 C 1.39847 * 126.87252 * 179.97438 * 12 11 4 14 14 H 1.07996 * 119.99908 * 180.02562 * 13 12 11 15 15 C 1.40164 * 120.00108 * 0.02562 * 13 12 11 16 16 N 1.30801 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00102 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46898 * 90.00432 * 17 15 13 19 19 H 1.48507 * 109.47035 * 210.00100 * 17 15 13 20 20 H 1.48495 * 109.47192 * 330.00012 * 17 15 13 21 21 H 1.09003 * 109.47404 * 270.30685 * 1 2 3 22 22 H 1.09005 * 109.47267 * 30.30487 * 1 2 3 23 23 H 1.09001 * 109.47145 * 150.30442 * 1 2 3 24 24 H 1.09006 * 110.85287 * 89.70980 * 7 5 4 25 25 H 1.09007 * 110.84948 * 326.09548 * 7 5 4 26 26 H 1.09000 * 109.83189 * 261.84669 * 8 7 5 27 27 H 1.08997 * 109.83895 * 140.86726 * 8 7 5 28 28 H 1.08997 * 110.30942 * 94.48681 * 10 9 8 29 29 H 1.08999 * 110.30828 * 216.65652 * 10 9 8 30 30 H 0.97004 * 119.99938 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0724 0.0000 4 6 3.5487 0.6855 -0.0023 5 6 4.7421 1.6059 -0.0055 6 1 5.6712 1.0402 -0.0761 7 6 4.7415 2.5274 1.2445 8 6 5.5002 3.7715 0.7348 9 8 5.4195 3.7718 -0.6953 10 6 4.6379 2.6529 -1.1429 11 8 3.6069 -0.6534 0.0044 12 6 2.3354 -1.1213 0.0060 13 6 1.9343 -2.4610 0.0119 14 1 0.8834 -2.7100 0.0122 15 6 2.8961 -3.4806 0.0175 16 7 4.1689 -3.1789 0.0176 17 14 2.3603 -5.2700 0.0247 18 1 2.2200 -5.7503 -1.3735 19 1 3.3791 -6.0890 0.7295 20 1 1.0560 -5.3934 0.7237 21 1 -0.3634 0.0055 1.0277 22 1 -0.3634 0.8873 -0.5186 23 1 -0.3633 -0.8927 -0.5091 24 1 5.2752 2.0594 2.0718 25 1 3.7233 2.7861 1.5353 26 1 6.5436 3.7215 1.0462 27 1 5.0376 4.6752 1.1315 28 1 3.5996 2.9508 -1.2889 29 1 5.0501 2.2492 -2.0676 30 1 4.8345 -3.8845 0.0210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283391.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = -76.384746 kcal Electronic energy + Delta-G solvation = -15210.936249 eV Core-core repulsion = 12584.844613 eV Total energy + Delta-G solvation = -2626.091635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.03014 -40.20883 -35.88882 -35.16321 -33.96117 -31.65760 -30.21551 -29.28014 -26.14801 -23.90824 -23.05655 -21.53868 -21.15971 -19.41554 -17.71542 -17.41896 -16.91828 -16.68281 -15.90541 -15.72603 -15.03132 -14.50427 -14.44123 -13.78962 -13.63990 -13.51234 -13.08763 -12.99754 -12.77397 -12.53429 -12.47880 -12.41573 -12.05955 -11.82274 -11.40585 -11.17992 -10.81639 -10.51140 -9.36099 -8.87511 -6.54392 1.04265 1.36393 1.53530 1.61244 2.12387 2.16536 2.55736 2.99004 3.07148 3.58557 3.81988 3.94683 4.06383 4.20703 4.29867 4.56454 4.68241 4.79261 4.85782 4.91757 4.95974 4.96925 5.01912 5.12800 5.18675 5.38969 5.66533 5.92713 6.08413 6.29965 6.47724 6.57259 7.65787 8.14534 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.007718 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.098258 B = 3627.158169 C = 4097.336426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.236 4.236 3 N -0.455 5.455 4 C 0.020 3.980 5 C -0.004 4.004 6 H 0.098 0.902 7 C -0.138 4.138 8 C 0.056 3.944 9 O -0.396 6.396 10 C 0.075 3.925 11 O -0.213 6.213 12 C 0.143 3.857 13 C -0.454 4.454 14 H 0.122 0.878 15 C 0.019 3.981 16 N -0.810 5.810 17 Si 1.008 2.992 18 H -0.257 1.257 19 H -0.266 1.266 20 H -0.246 1.246 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 2.660 1.326 3.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.361 4.361 3 N -0.184 5.184 4 C -0.180 4.180 5 C -0.023 4.023 6 H 0.116 0.884 7 C -0.176 4.176 8 C -0.020 4.020 9 O -0.316 6.316 10 C -0.002 4.002 11 O -0.102 6.102 12 C 0.089 3.911 13 C -0.482 4.482 14 H 0.139 0.861 15 C -0.199 4.199 16 N -0.436 5.436 17 Si 0.826 3.174 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.169 1.169 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.606 3.421 1.206 3.967 hybrid contribution 0.060 -1.585 0.143 1.592 sum 1.666 1.836 1.348 2.822 Atomic orbital electron populations 1.19458 0.86646 1.01068 1.00387 1.22000 0.97549 0.87386 1.29170 1.69173 1.01044 1.33111 1.15068 1.25017 0.94370 0.80580 1.18044 1.20752 0.91660 0.92526 0.97412 0.88423 1.23137 1.01910 0.95268 0.97329 1.23266 1.01300 0.97479 0.79957 1.88330 1.73292 1.47751 1.22211 1.23233 0.95851 0.84570 0.96575 1.84678 1.30508 1.21662 1.73381 1.20955 0.79811 0.95721 0.94642 1.19247 0.96447 0.86805 1.45705 0.86057 1.27303 0.93996 1.07727 0.90842 1.69847 1.02840 1.38472 1.32406 0.84802 0.79762 0.72878 0.79979 1.18128 1.19004 1.16940 0.93267 0.92608 0.91906 0.88776 0.91345 0.88786 0.89701 0.92486 0.88961 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.77 10.23 71.23 0.73 -0.04 16 2 C -0.24 -12.48 7.27 42.61 0.31 -12.17 16 3 N -0.46 -23.80 10.82 -288.41 -3.12 -26.92 16 4 C 0.02 1.04 7.01 88.26 0.62 1.66 16 5 C 0.00 -0.15 3.63 -10.09 -0.04 -0.18 16 6 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 7 C -0.14 -4.51 6.49 31.85 0.21 -4.30 16 8 C 0.06 1.50 7.79 72.45 0.56 2.07 16 9 O -0.40 -13.03 11.36 -148.98 -1.69 -14.72 16 10 C 0.07 2.70 7.25 72.65 0.53 3.22 16 11 O -0.21 -12.35 9.17 -11.82 -0.11 -12.46 16 12 C 0.14 8.15 6.83 22.94 0.16 8.31 16 13 C -0.45 -23.88 9.09 23.13 0.21 -23.66 16 14 H 0.12 5.80 7.35 -2.91 -0.02 5.78 16 15 C 0.02 0.94 5.50 85.31 0.47 1.41 16 16 N -0.81 -42.45 12.06 21.87 0.26 -42.18 16 17 Si 1.01 35.72 29.56 68.60 2.03 37.75 16 18 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 19 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 21 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.06 2.48 7.60 -2.39 -0.02 2.46 16 24 H 0.09 2.75 8.14 -2.38 -0.02 2.74 16 25 H 0.07 2.47 7.95 -2.38 -0.02 2.45 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.24 7.76 -2.39 -0.02 2.22 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.30 13.79 8.30 -92.71 -0.77 13.02 16 Total: -1.00 -64.78 261.32 2.26 -62.51 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.14 Total: 19.72 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.75 Total: -23.70 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -2.86 Total: -69.10 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.80 Total: -27.18 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -64.78 2.26 -62.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283391.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.870 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds