Wall clock time and date at job start Mon Mar 30 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33324 * 126.45964 * 2 1 4 4 C 1.30798 * 109.25623 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.15754 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.75647 * 179.32588 * 5 4 3 7 7 C 1.55307 * 110.84683 * 302.79386 * 5 4 3 8 8 C 1.55202 * 100.82966 * 152.17611 * 7 5 4 9 9 O 1.43645 * 105.26178 * 323.82089 * 8 7 5 10 10 C 1.43244 * 109.97051 * 24.28076 * 9 8 7 11 11 O 1.34014 * 109.69177 * 0.02562 * 4 3 2 12 12 C 1.35482 * 107.71509 * 0.02562 * 11 4 3 13 13 C 1.39852 * 126.87102 * 179.97438 * 12 11 4 14 14 H 1.07999 * 119.99860 * 180.02562 * 13 12 11 15 15 C 1.40159 * 120.00105 * 0.02562 * 13 12 11 16 16 N 1.30797 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00189 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47016 * 89.99722 * 17 15 13 19 19 H 1.48491 * 109.47413 * 210.00504 * 17 15 13 20 20 H 1.48497 * 109.46750 * 330.00609 * 17 15 13 21 21 H 1.08997 * 109.47111 * 89.97167 * 1 2 3 22 22 H 1.08994 * 109.46797 * 209.97233 * 1 2 3 23 23 H 1.08994 * 109.46817 * 329.97378 * 1 2 3 24 24 H 1.08996 * 111.12912 * 270.24092 * 7 5 4 25 25 H 1.09003 * 111.12156 * 34.40372 * 7 5 4 26 26 H 1.08996 * 110.37827 * 204.80184 * 8 7 5 27 27 H 1.09007 * 110.21265 * 82.75554 * 8 7 5 28 28 H 1.08998 * 109.83044 * 238.77828 * 10 9 8 29 29 H 1.08997 * 109.90512 * 117.84746 * 10 9 8 30 30 H 0.97005 * 120.00343 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0723 0.0000 4 6 3.5488 0.6854 0.0006 5 6 4.7421 1.6057 0.0002 6 1 5.6704 1.0346 0.0128 7 6 4.7000 2.5649 -1.2206 8 6 5.4830 3.7828 -0.6617 9 8 5.1136 3.8662 0.7240 10 6 4.6823 2.5834 1.1934 11 8 3.6070 -0.6534 0.0004 12 6 2.3355 -1.1213 -0.0009 13 6 1.9344 -2.4611 -0.0020 14 1 0.8835 -2.7101 -0.0034 15 6 2.8962 -3.4806 -0.0013 16 7 4.1689 -3.1791 0.0008 17 14 2.3604 -5.2702 -0.0036 18 1 2.2205 -5.7432 -1.4042 19 1 3.3788 -6.0927 0.6974 20 1 1.0558 -5.3971 0.6942 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8897 0.5142 24 1 5.2077 2.1286 -2.0807 25 1 3.6748 2.8392 -1.4694 26 1 5.1931 4.6934 -1.1859 27 1 6.5561 3.6170 -0.7578 28 1 3.6601 2.6505 1.5656 29 1 5.3432 2.2377 1.9882 30 1 4.8346 -3.8846 0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:01 Heat of formation + Delta-G solvation = -76.237496 kcal Electronic energy + Delta-G solvation = -15223.545436 eV Core-core repulsion = 12597.460186 eV Total energy + Delta-G solvation = -2626.085250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.03453 -40.18319 -35.88901 -35.16304 -33.96226 -31.64778 -30.20194 -29.28508 -26.12816 -23.85095 -23.17091 -21.53559 -21.12109 -19.41608 -17.71896 -17.38617 -16.90702 -16.67334 -16.04026 -15.67573 -15.09068 -14.53232 -14.22799 -13.79945 -13.65641 -13.49972 -13.08727 -12.99016 -12.77061 -12.56770 -12.49732 -12.35039 -12.05456 -11.83837 -11.41669 -11.19899 -10.80444 -10.50020 -9.36108 -8.87565 -6.54474 1.04249 1.36327 1.53498 1.61249 2.12362 2.16805 2.59375 2.95243 3.06983 3.59861 3.80317 3.97117 4.06772 4.17813 4.33777 4.56406 4.70497 4.80591 4.83126 4.92959 4.95533 4.96632 5.01288 5.12617 5.20520 5.38706 5.65895 5.94883 6.08531 6.30143 6.47586 6.57200 7.66228 8.14533 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040761 B = 0.007731 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.767368 B = 3620.851877 C = 4081.494378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.237 4.237 3 N -0.456 5.456 4 C 0.019 3.981 5 C -0.003 4.003 6 H 0.100 0.900 7 C -0.138 4.138 8 C 0.056 3.944 9 O -0.398 6.398 10 C 0.073 3.927 11 O -0.213 6.213 12 C 0.144 3.856 13 C -0.454 4.454 14 H 0.121 0.879 15 C 0.020 3.980 16 N -0.809 5.809 17 Si 1.008 2.992 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.247 1.247 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 2.531 -1.402 3.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.362 4.362 3 N -0.185 5.185 4 C -0.182 4.182 5 C -0.022 4.022 6 H 0.119 0.881 7 C -0.176 4.176 8 C -0.020 4.020 9 O -0.318 6.318 10 C -0.004 4.004 11 O -0.102 6.102 12 C 0.089 3.911 13 C -0.482 4.482 14 H 0.139 0.861 15 C -0.198 4.198 16 N -0.435 5.435 17 Si 0.826 3.174 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.170 1.170 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.238 3.319 -1.271 4.200 hybrid contribution 0.110 -1.637 -0.099 1.644 sum 2.349 1.682 -1.370 3.197 Atomic orbital electron populations 1.19454 0.86686 1.01016 1.00394 1.22004 0.97556 0.87410 1.29234 1.69180 1.01144 1.33150 1.15051 1.25111 0.94475 0.80590 1.17984 1.20670 0.91745 0.92664 0.97166 0.88134 1.23326 1.01875 0.95149 0.97282 1.23591 0.99297 0.98434 0.80662 1.88332 1.86326 1.30064 1.27035 1.23006 0.99822 0.82053 0.95511 1.84676 1.30472 1.21651 1.73392 1.20952 0.79823 0.95700 0.94642 1.19244 0.96445 0.86795 1.45734 0.86094 1.27297 0.93997 1.07711 0.90835 1.69841 1.02830 1.38477 1.32391 0.84801 0.79763 0.72873 0.79979 1.18119 1.18969 1.16981 0.93226 0.91915 0.92698 0.88405 0.91521 0.87581 0.89691 0.92606 0.89993 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.78 10.23 71.24 0.73 -0.05 16 2 C -0.24 -12.66 7.27 42.62 0.31 -12.35 16 3 N -0.46 -24.19 10.79 -288.42 -3.11 -27.30 16 4 C 0.02 0.97 6.88 88.26 0.61 1.58 16 5 C 0.00 -0.11 3.52 -10.28 -0.04 -0.14 16 6 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 7 C -0.14 -4.50 6.63 32.14 0.21 -4.29 16 8 C 0.06 1.47 7.78 72.74 0.57 2.04 16 9 O -0.40 -13.33 11.36 -148.98 -1.69 -15.02 16 10 C 0.07 2.67 7.40 72.45 0.54 3.21 16 11 O -0.21 -12.35 9.17 -11.82 -0.11 -12.45 16 12 C 0.14 8.19 6.83 22.95 0.16 8.35 16 13 C -0.45 -23.96 9.09 23.13 0.21 -23.75 16 14 H 0.12 5.81 7.35 -2.91 -0.02 5.79 16 15 C 0.02 0.96 5.50 85.31 0.47 1.43 16 16 N -0.81 -42.37 12.06 21.87 0.26 -42.11 16 17 Si 1.01 35.74 29.56 68.60 2.03 37.77 16 18 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 19 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 20 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 21 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.06 2.51 7.60 -2.39 -0.02 2.49 16 23 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.07 2.46 7.90 -2.39 -0.02 2.44 16 26 H 0.11 2.31 8.14 -2.39 -0.02 2.30 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.30 13.76 8.30 -92.70 -0.77 12.99 16 Total: -1.00 -65.79 261.10 2.28 -63.51 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.14 Total: 19.56 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.76 Total: -23.97 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -2.85 Total: -69.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.80 Total: -27.47 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -65.79 2.28 -63.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds