Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48506 * 109.46791 * 240.00004 * 3 2 1 5 5 H 1.48499 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46998 * 119.99691 * 3 2 1 7 7 C 1.40344 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.39795 * 119.99639 * 0.02562 * 7 2 1 10 10 N 1.32812 * 125.79756 * 180.30377 * 9 7 2 11 11 C 1.33067 * 108.65355 * 180.15517 * 10 9 7 12 12 C 1.50689 * 126.01238 * 179.87069 * 11 10 9 13 13 C 1.53180 * 109.61665 * 145.09196 * 12 11 10 14 14 C 1.53096 * 109.16300 * 176.89064 * 13 12 11 15 15 O 1.42905 * 109.41404 * 302.38785 * 14 13 12 16 16 C 1.42905 * 114.09321 * 61.16204 * 15 14 13 17 17 C 1.53093 * 109.41479 * 298.83564 * 16 15 14 18 18 C 1.35938 * 107.97699 * 359.60645 * 11 10 9 19 19 O 1.34600 * 107.35838 * 0.24119 * 18 11 10 20 20 H 0.97001 * 120.00351 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.54704 * 24.86779 * 12 11 10 22 22 H 1.09001 * 109.52400 * 56.98393 * 13 12 11 23 23 H 1.09004 * 109.52264 * 296.79488 * 13 12 11 24 24 H 1.09005 * 109.47867 * 182.40583 * 14 13 12 25 25 H 1.09001 * 109.48124 * 62.37304 * 14 13 12 26 26 H 1.09000 * 109.48199 * 58.82419 * 16 15 14 27 27 H 1.09009 * 109.47312 * 178.84764 * 16 15 14 28 28 H 1.08996 * 109.52403 * 177.51694 * 17 16 15 29 29 H 1.09001 * 109.52367 * 297.64466 * 17 16 15 30 30 H 1.07998 * 126.32384 * 180.26236 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0939 1.6965 -1.2126 5 1 1.2751 2.7464 -0.0006 6 1 3.0938 1.6966 1.2125 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2153 0.0010 9 6 1.3091 -2.4260 0.0005 10 7 1.8536 -3.6374 0.0067 11 6 0.8781 -4.5425 0.0011 12 6 1.0577 -6.0386 0.0023 13 6 -0.0607 -6.6902 0.8215 14 6 0.0867 -8.2124 0.7517 15 8 0.0505 -8.6310 -0.6142 16 6 1.1013 -8.0906 -1.4180 17 6 0.9946 -6.5635 -1.4354 18 6 -0.3089 -3.8800 -0.0001 19 8 -0.0335 -2.5625 -0.0004 20 1 -0.4851 0.8400 -0.0004 21 1 2.0239 -6.2896 0.4400 22 1 -1.0284 -6.3988 0.4132 23 1 0.0108 -6.3645 1.8593 24 1 -0.7315 -8.6822 1.2976 25 1 1.0371 -8.5064 1.1969 26 1 2.0650 -8.3830 -1.0011 27 1 1.0140 -8.4728 -2.4351 28 1 1.8209 -6.1472 -2.0116 29 1 0.0487 -6.2695 -1.8903 30 1 -1.2916 -4.3281 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325170.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -78.275135 kcal Electronic energy + Delta-G solvation = -15101.027205 eV Core-core repulsion = 12474.853596 eV Total energy + Delta-G solvation = -2626.173609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05268 -40.17970 -36.12637 -35.56675 -33.84916 -32.04684 -30.84405 -27.75196 -25.84247 -24.45369 -22.92887 -21.89739 -20.87222 -19.19133 -17.47940 -17.01214 -16.92455 -16.65201 -16.44557 -15.67120 -15.54289 -15.04431 -14.74352 -14.13149 -13.58779 -13.29044 -13.21363 -12.99604 -12.89543 -12.28047 -12.14519 -12.02425 -11.86282 -11.47426 -11.26016 -11.05783 -10.67880 -10.49448 -9.41635 -8.85667 -6.76857 1.10305 1.37936 1.54747 1.56909 2.16012 2.19341 2.94557 2.97913 3.18041 3.63653 3.87017 3.95312 4.07934 4.31534 4.32859 4.54322 4.62013 4.70192 4.78778 4.81529 4.86272 4.95956 5.02888 5.12128 5.21688 5.39434 5.76734 5.94886 6.11913 6.25962 6.51088 6.60565 7.79693 8.19209 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.074866 B = 0.006050 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.912951 B = 4627.033123 C = 4767.960869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.027 3.973 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.112 0.888 9 C 0.311 3.689 10 N -0.641 5.641 11 C 0.017 3.983 12 C 0.000 4.000 13 C -0.141 4.141 14 C 0.066 3.934 15 O -0.397 6.397 16 C 0.069 3.931 17 C -0.138 4.138 18 C -0.232 4.232 19 O -0.214 6.214 20 H 0.298 0.702 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -8.667 -0.018 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.192 4.192 3 Si 0.833 3.167 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.129 0.871 9 C 0.127 3.873 10 N -0.376 5.376 11 C -0.108 4.108 12 C -0.020 4.020 13 C -0.179 4.179 14 C -0.010 4.010 15 O -0.316 6.316 16 C -0.007 4.007 17 C -0.176 4.176 18 C -0.304 4.304 19 O -0.106 6.106 20 H 0.109 0.891 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.301 -8.775 -0.082 8.781 hybrid contribution -0.489 1.165 0.095 1.267 sum -0.189 -7.610 0.013 7.613 Atomic orbital electron populations 1.69764 1.09506 1.31992 1.32715 1.27255 0.95896 1.05569 0.90468 0.84756 0.78250 0.73002 0.80670 1.17663 1.18433 1.17632 1.18794 0.95232 0.86840 1.49013 0.87061 1.22672 0.77356 0.94525 0.92756 1.70789 1.32843 0.98539 1.35394 1.21897 0.89293 0.96951 1.02615 1.19446 0.99626 0.85887 0.96997 1.22204 0.98249 0.97058 1.00378 1.22698 1.03323 0.92181 0.82840 1.87877 1.51784 1.70459 1.21465 1.22650 0.90707 0.90631 0.96762 1.22147 1.02294 0.97641 0.95558 1.24667 1.00567 0.81546 1.23626 1.84790 1.26643 1.25754 1.73428 0.89098 0.91053 0.91330 0.90899 0.86528 0.91933 0.91873 0.86872 0.91938 0.92143 0.78307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.94 11.98 21.90 0.26 -43.68 16 2 C 0.03 1.39 5.50 85.39 0.47 1.86 16 3 Si 1.02 37.43 29.56 68.60 2.03 39.46 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 7 C -0.46 -26.47 9.45 23.16 0.22 -26.25 16 8 H 0.11 6.03 7.85 -2.92 -0.02 6.01 16 9 C 0.31 18.89 7.66 84.92 0.65 19.54 16 10 N -0.64 -36.92 11.34 -297.41 -3.37 -40.30 16 11 C 0.02 0.83 6.04 41.83 0.25 1.08 16 12 C 0.00 -0.01 2.73 -11.42 -0.03 -0.05 16 13 C -0.14 -4.19 5.07 30.69 0.16 -4.04 16 14 C 0.07 1.54 6.84 72.01 0.49 2.03 16 15 O -0.40 -10.46 10.77 -148.98 -1.60 -12.07 16 16 C 0.07 1.70 6.84 72.01 0.49 2.19 16 17 C -0.14 -4.46 5.40 30.69 0.17 -4.30 16 18 C -0.23 -11.81 11.37 67.29 0.76 -11.04 16 19 O -0.21 -12.83 9.06 -11.87 -0.11 -12.94 16 20 H 0.30 14.23 8.29 -92.71 -0.77 13.46 16 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.07 2.08 7.14 -2.39 -0.02 2.07 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.20 8.48 7.31 -2.91 -0.02 8.46 16 Total: -1.00 -69.06 256.67 1.97 -67.08 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.14 Total: 21.42 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.63 Total: -18.98 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -3.11 Total: -83.98 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.71 Total: -25.01 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -69.06 1.97 -67.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325170.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.192 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds