Wall clock time and date at job start Mon Mar 30 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00381 * 2 1 4 4 H 1.48501 * 109.46890 * 240.00334 * 3 2 1 5 5 H 1.48503 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47395 * 120.00070 * 3 2 1 7 7 C 1.37876 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00038 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.52018 * 300.12006 * 9 7 2 11 11 C 1.53246 * 109.52331 * 179.97438 * 9 7 2 12 12 C 1.53237 * 108.56913 * 184.47772 * 11 9 7 13 13 C 1.50595 * 109.16004 * 55.61443 * 12 11 9 14 14 O 1.21225 * 119.36080 * 150.92650 * 13 12 11 15 15 N 1.34141 * 121.27672 * 330.90931 * 13 12 11 16 16 C 1.46502 * 118.70233 * 180.54273 * 15 13 12 17 17 C 1.53006 * 117.49963 * 132.39588 * 16 15 13 18 18 C 1.53005 * 117.49681 * 63.77378 * 16 15 13 19 19 C 1.34133 * 122.59282 * 0.53828 * 15 13 12 20 20 O 1.21220 * 119.36291 * 179.45660 * 19 15 13 21 21 H 0.97005 * 120.00046 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.62113 * 304.20545 * 11 9 7 23 23 H 1.08998 * 109.61764 * 64.56861 * 11 9 7 24 24 H 1.08997 * 109.52764 * 175.51805 * 12 11 9 25 25 H 1.08999 * 109.52182 * 295.71392 * 12 11 9 26 26 H 1.09001 * 115.55216 * 278.10969 * 16 15 13 27 27 H 1.08995 * 117.49655 * 0.02562 * 17 16 15 28 28 H 1.08996 * 117.49670 * 145.01926 * 17 16 15 29 29 H 1.09002 * 117.49448 * 214.97420 * 18 16 15 30 30 H 1.08995 * 117.50040 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6219 -2.5566 0.8889 11 6 2.2456 -3.6649 0.0005 12 6 1.4607 -4.9761 -0.1129 13 6 0.5889 -4.9258 -1.3398 14 8 0.3101 -5.9566 -1.9135 15 7 0.1147 -3.7624 -1.8099 16 6 -0.7384 -3.7801 -3.0008 17 6 -2.0373 -2.9731 -2.9515 18 6 -2.0836 -4.5014 -2.8955 19 6 0.3905 -2.5836 -1.2325 20 8 -0.0614 -1.5663 -1.7126 21 1 -0.4850 0.8401 0.0004 22 1 2.9223 -3.5687 -0.8486 23 1 2.8185 -3.6571 0.9278 24 1 2.1564 -5.8113 -0.1944 25 1 0.8373 -5.1051 0.7719 26 1 -0.2132 -3.8314 -3.9546 27 1 -2.2570 -2.4286 -2.0332 28 1 -2.3668 -2.4930 -3.8729 29 1 -2.4436 -5.0267 -3.7802 30 1 -2.3341 -4.9623 -1.9401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:08 Heat of formation + Delta-G solvation = -50.774686 kcal Electronic energy + Delta-G solvation = -15882.888242 eV Core-core repulsion = 13257.907142 eV Total energy + Delta-G solvation = -2624.981100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.29693 -39.37191 -37.85278 -36.11353 -34.82204 -33.29448 -29.98422 -26.11261 -25.05321 -24.02653 -22.85006 -22.32020 -19.23453 -18.72791 -17.96112 -17.52779 -16.83079 -16.40110 -16.19829 -15.23035 -14.94505 -14.80955 -14.76512 -14.02409 -13.52721 -13.35226 -13.22178 -12.68718 -12.52037 -12.42486 -12.15250 -11.83998 -11.42446 -11.38036 -11.11854 -10.90228 -10.49573 -10.36888 -10.19483 -8.07359 -6.19025 0.99070 1.43880 1.46337 1.52314 1.87266 2.30325 2.49805 2.72235 3.26334 3.58732 3.77064 3.89321 3.95325 4.18200 4.23735 4.35755 4.59264 4.65860 4.72553 4.91398 4.93680 4.97214 5.11417 5.15890 5.41094 5.52151 5.79868 6.07070 6.47323 6.77254 6.87955 7.47386 7.54207 8.98098 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034546 B = 0.011000 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.307988 B = 2544.740972 C = 3183.354771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.031 3.969 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.030 3.970 10 H 0.050 0.950 11 C -0.103 4.103 12 C -0.131 4.131 13 C 0.521 3.479 14 O -0.547 6.547 15 N -0.556 5.556 16 C 0.025 3.975 17 C -0.154 4.154 18 C -0.145 4.145 19 C 0.496 3.504 20 O -0.474 6.474 21 H 0.254 0.746 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.131 0.869 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -7.958 -1.187 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.591 4.591 8 H 0.087 0.913 9 C 0.009 3.991 10 H 0.068 0.932 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.313 3.687 14 O -0.425 6.425 15 N -0.301 5.301 16 C -0.078 4.078 17 C -0.191 4.191 18 C -0.182 4.182 19 C 0.286 3.714 20 O -0.341 6.341 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.120 0.880 24 H 0.149 0.851 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.085 -7.762 -1.711 7.948 hybrid contribution 0.104 1.249 -0.165 1.264 sum 0.018 -6.513 -1.876 6.778 Atomic orbital electron populations 1.70176 1.07309 1.26783 1.46137 1.25693 0.95398 1.02442 0.93900 0.85728 0.78371 0.79321 0.78827 1.20436 1.21781 1.18570 1.21035 0.93172 0.90015 1.54886 0.91296 1.19048 0.93465 0.96212 0.90353 0.93240 1.21690 0.97562 0.90831 1.03968 1.22014 0.99035 1.01318 0.94641 1.21614 0.79074 0.81683 0.86297 1.90617 1.58816 1.33220 1.59827 1.46953 1.46246 1.09223 1.27643 1.21852 0.87174 1.09280 0.89500 1.23036 0.98064 0.94221 1.03780 1.23210 0.96592 0.94190 1.04239 1.23088 0.80457 0.81082 0.86777 1.90642 1.47814 1.34337 1.61318 0.93657 0.92177 0.87979 0.85113 0.86170 0.86225 0.90953 0.86325 0.85170 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.59 10.65 21.45 0.23 -50.37 16 2 C 0.03 1.68 4.83 84.65 0.41 2.08 16 3 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.55 -28.75 8.47 25.60 0.22 -28.54 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.39 2.36 -12.24 -0.03 1.36 16 10 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 11 C -0.10 -3.45 5.31 30.76 0.16 -3.29 16 12 C -0.13 -3.73 6.07 29.89 0.18 -3.55 16 13 C 0.52 19.01 7.38 87.72 0.65 19.66 16 14 O -0.55 -21.28 16.44 -2.86 -0.05 -21.33 16 15 N -0.56 -22.83 2.85 -735.31 -2.09 -24.92 16 16 C 0.02 0.93 5.31 44.99 0.24 1.17 16 17 C -0.15 -5.44 9.12 30.60 0.28 -5.16 16 18 C -0.14 -4.48 9.73 30.60 0.30 -4.18 16 19 C 0.50 23.86 6.87 87.72 0.60 24.46 16 20 O -0.47 -26.37 11.39 -2.85 -0.03 -26.40 16 21 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 22 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 23 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.13 2.91 8.14 -2.39 -0.02 2.90 16 25 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 27 H 0.07 3.07 7.35 -2.39 -0.02 3.06 16 28 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -65.86 254.31 4.22 -61.64 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.14 Total: 11.94 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 3.01 Total: 4.02 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.87 Total: -75.29 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -0.08 Total: -47.73 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.86 4.22 -61.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.865 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds