Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99574 * 2 1 4 4 H 1.48489 * 109.47043 * 269.99480 * 3 2 1 5 5 H 1.48496 * 109.47157 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.46658 * 149.99894 * 3 2 1 7 7 C 1.37873 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99641 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00194 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.53932 * 113.73220 * 271.72497 * 10 9 7 12 12 N 1.47963 * 86.17824 * 221.92173 * 11 10 9 13 13 C 1.46900 * 110.99920 * 137.58603 * 12 11 10 14 14 C 1.53000 * 109.47327 * 70.63590 * 13 12 11 15 15 F 1.39898 * 109.46782 * 60.00560 * 14 13 12 16 16 F 1.39894 * 109.47221 * 179.97438 * 14 13 12 17 17 F 1.39898 * 109.47543 * 300.00343 * 14 13 12 18 18 C 1.47956 * 90.76518 * 24.69157 * 12 11 10 19 19 H 0.96994 * 119.99914 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.47549 * 60.00240 * 9 7 2 21 21 H 1.09000 * 109.46862 * 299.99921 * 9 7 2 22 22 H 1.09001 * 112.93489 * 43.43627 * 10 9 7 23 23 H 1.08997 * 113.76329 * 336.24011 * 11 10 9 24 24 H 1.08998 * 113.75871 * 107.60749 * 11 10 9 25 25 H 1.09002 * 109.47579 * 190.64309 * 13 12 11 26 26 H 1.09003 * 109.46974 * 310.64232 * 13 12 11 27 27 H 1.09002 * 113.76134 * 220.99069 * 18 12 11 28 28 H 1.09003 * 113.75805 * 89.62387 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 4.1877 -3.2337 1.4113 12 7 5.4545 -3.8107 0.9097 13 6 6.5253 -3.6757 1.9062 14 6 6.2522 -4.6190 3.0794 15 9 6.2096 -5.9385 2.6166 16 9 7.2723 -4.4909 4.0281 17 9 5.0253 -4.2907 3.6660 18 6 5.5518 -2.7527 -0.1199 19 1 -0.4850 0.8400 -0.0004 20 1 3.8747 -0.6799 0.8911 21 1 3.8753 -0.6802 -0.8889 22 1 3.4763 -3.2804 -0.6877 23 1 4.3246 -2.4857 2.1921 24 1 3.4345 -3.9803 1.6633 25 1 7.4813 -3.9315 1.4492 26 1 6.5586 -2.6476 2.2668 27 1 5.8886 -3.1148 -1.0913 28 1 6.0877 -1.8638 0.2131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = -128.001555 kcal Electronic energy + Delta-G solvation = -15596.278253 eV Core-core repulsion = 12426.091605 eV Total energy + Delta-G solvation = -3170.186648 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.01606 -47.57402 -47.45196 -39.65502 -33.43487 -31.85953 -29.21221 -25.84060 -25.45518 -22.92532 -21.18310 -19.10731 -18.43650 -18.39823 -17.31000 -16.75967 -15.40780 -15.13286 -14.52783 -14.34740 -14.05801 -13.99908 -13.90317 -13.65505 -13.62334 -12.88192 -12.56559 -12.31707 -12.14954 -11.57911 -11.34006 -10.79658 -10.64474 -10.01834 -9.84690 -9.66215 -9.21696 -8.71621 -8.55882 -6.07323 -4.05725 2.76168 3.26768 3.34851 3.36034 3.69301 3.88054 4.07490 4.40971 4.47106 4.98655 5.06078 5.14737 5.19360 5.31458 5.62180 5.76102 5.90077 6.22119 6.30046 6.53439 6.64703 7.01092 7.17055 7.30252 7.73585 8.50010 8.98108 9.54496 11.06111 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.047451 B = 0.006534 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.939053 B = 4284.007478 C = 4315.062432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.089 4.089 11 C 0.009 3.991 12 N -0.481 5.481 13 C -0.027 4.027 14 C 0.457 3.543 15 F -0.176 7.176 16 F -0.190 7.190 17 F -0.179 7.179 18 C 0.003 3.997 19 H 0.263 0.737 20 H 0.016 0.984 21 H 0.017 0.983 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 -6.161 4.174 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.108 4.108 11 C -0.119 4.119 12 N -0.204 5.204 13 C -0.157 4.157 14 C 0.402 3.598 15 F -0.158 7.158 16 F -0.171 7.171 17 F -0.160 7.160 18 C -0.125 4.125 19 H 0.073 0.927 20 H 0.034 0.966 21 H 0.035 0.965 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.233 -6.764 4.033 16.267 hybrid contribution 0.422 1.587 0.593 1.746 sum 14.655 -5.177 4.626 16.216 Atomic orbital electron populations 1.69912 1.06289 1.26885 1.50992 1.25034 0.94716 0.99099 0.94611 0.86797 0.80247 0.83818 0.78477 1.20273 1.21388 1.19217 1.21090 0.89195 0.94530 1.50808 0.90840 1.19605 0.97645 0.90827 0.96378 1.22879 0.92267 0.99932 0.95683 1.24177 0.91181 0.98162 0.98352 1.68678 1.01663 1.42187 1.07896 1.23833 1.00955 0.98164 0.92726 1.20468 0.74021 0.81193 0.84073 1.93187 1.96103 1.37982 1.88520 1.93164 1.60345 1.95921 1.67684 1.93210 1.44669 1.92325 1.85823 1.24164 0.99714 0.92480 0.96186 0.92708 0.96589 0.96478 0.88600 0.90736 0.89168 0.86732 0.89858 0.89326 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.52 -14.28 9.65 -34.44 -0.33 -14.61 15 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 15 9 C -0.01 -0.16 3.90 -27.88 -0.11 -0.26 15 10 C -0.09 -1.65 3.78 -89.68 -0.34 -1.98 15 11 C 0.01 0.16 5.64 -2.77 -0.02 0.14 15 12 N -0.48 -7.17 6.19 -238.30 -1.47 -8.64 15 13 C -0.03 -0.32 4.94 -3.82 -0.02 -0.34 15 14 C 0.46 6.04 3.27 37.16 0.12 6.16 15 15 F -0.18 -2.51 17.24 2.25 0.04 -2.47 15 16 F -0.19 -2.37 17.32 2.25 0.04 -2.33 15 17 F -0.18 -2.67 15.11 2.25 0.03 -2.64 15 18 C 0.00 0.04 7.54 -2.77 -0.02 0.02 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.02 0.36 6.89 -51.93 -0.36 0.00 15 21 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 15 22 H 0.10 1.86 8.12 -51.93 -0.42 1.44 15 23 H 0.07 1.28 7.22 -51.93 -0.37 0.91 15 24 H 0.09 1.61 8.13 -51.93 -0.42 1.18 15 25 H 0.11 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.08 0.94 7.69 -51.93 -0.40 0.54 15 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 28 H 0.07 0.95 7.75 -51.93 -0.40 0.55 15 LS Contribution 248.17 15.07 3.74 3.74 Total: -1.00 -29.52 248.17 -5.53 -35.05 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -3.20 Total: -3.45 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.81 Total: -9.08 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.70 Total: -35.31 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.52 -5.53 -35.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.954 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds