Wall clock time and date at job start Mon Mar 30 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09000 * 112.96042 * 297.14883 * 10 9 7 12 12 C 1.53936 * 113.76019 * 165.49500 * 10 9 7 13 13 C 1.53933 * 86.34277 * 221.96467 * 12 10 9 14 14 N 1.47959 * 86.17845 * 23.72335 * 13 12 10 15 15 C 1.46901 * 110.99959 * 222.41366 * 14 13 12 16 16 C 1.52998 * 109.47473 * 269.36262 * 15 14 13 17 17 F 1.39900 * 109.47253 * 59.99587 * 16 15 14 18 18 F 1.39896 * 109.47241 * 180.02562 * 16 15 14 19 19 F 1.39908 * 109.46644 * 299.99757 * 16 15 14 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 113.73113 * 336.32515 * 12 10 9 24 24 H 1.08997 * 113.72916 * 107.50063 * 12 10 9 25 25 H 1.08999 * 113.75574 * 138.03594 * 13 12 10 26 26 H 1.08995 * 113.76262 * 269.40819 * 13 12 10 27 27 H 1.09006 * 109.46756 * 29.36187 * 15 14 13 28 28 H 1.08997 * 109.47392 * 149.35941 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.8697 -3.6915 -0.8826 12 6 1.6118 -5.0182 0.3694 13 6 2.8660 -5.2656 1.2270 14 7 3.0028 -3.7931 1.2747 15 6 4.4034 -3.3885 1.0937 16 6 5.0885 -3.2976 2.4587 17 9 5.0414 -4.5461 3.0882 18 9 6.4221 -2.9117 2.2864 19 9 4.4282 -2.3513 3.2498 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 0.6932 -4.9332 0.9499 24 1 1.5174 -5.6964 -0.4786 25 1 2.6533 -5.7184 2.1955 26 1 3.6732 -5.7645 0.6909 27 1 4.9178 -4.1258 0.4774 28 1 4.4401 -2.4158 0.6033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260477985.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:27 Heat of formation + Delta-G solvation = -150.365149 kcal Electronic energy + Delta-G solvation = -15966.645073 eV Core-core repulsion = 12795.488667 eV Total energy + Delta-G solvation = -3171.156407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.98592 -48.53855 -48.44941 -40.81924 -35.10340 -32.90269 -31.06456 -27.35768 -26.51620 -23.68980 -23.34978 -20.46417 -19.47690 -19.30662 -18.65920 -18.15384 -16.73077 -16.61318 -15.94659 -15.41492 -15.33740 -15.11598 -14.92387 -14.66155 -14.63784 -14.37928 -13.86120 -13.36941 -13.24039 -12.94023 -12.75425 -12.43009 -12.28542 -12.09656 -11.69685 -11.15004 -10.90276 -10.52497 -9.69968 -8.14824 -6.22031 1.38592 1.41093 1.51107 1.81797 2.42535 2.68295 2.99822 3.14299 3.20458 3.50949 3.76846 3.93910 4.16321 4.32728 4.47694 4.52562 4.78665 4.88958 5.01474 5.22771 5.36274 5.52516 5.71580 5.85338 6.18383 6.29231 6.92324 7.45007 8.97277 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.010762 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.264360 B = 2601.206693 C = 3410.745424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.041 3.959 10 C 0.053 3.947 11 H 0.085 0.915 12 C -0.137 4.137 13 C 0.006 3.994 14 N -0.492 5.492 15 C -0.021 4.021 16 C 0.461 3.539 17 F -0.184 7.184 18 F -0.188 7.188 19 F -0.191 7.191 20 H 0.260 0.740 21 H -0.007 1.007 22 H 0.003 0.997 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -10.223 1.190 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.055 4.055 11 H 0.103 0.897 12 C -0.175 4.175 13 C -0.122 4.122 14 N -0.215 5.215 15 C -0.151 4.151 16 C 0.406 3.594 17 F -0.166 7.166 18 F -0.169 7.169 19 F -0.172 7.172 20 H 0.069 0.931 21 H 0.011 0.989 22 H 0.021 0.979 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.461 -9.742 1.802 13.700 hybrid contribution 0.528 0.930 -0.258 1.100 sum 9.989 -8.813 1.544 13.410 Atomic orbital electron populations 1.70081 1.07590 1.27285 1.52655 1.25828 0.95606 1.02828 0.95469 0.85607 0.79315 0.79939 0.77482 1.18640 1.20360 1.21204 1.21531 0.93203 0.91917 1.48718 0.92247 1.18872 0.93561 0.92253 0.94970 1.23490 0.95357 0.96137 0.90469 0.89723 1.23369 0.97974 0.95831 1.00306 1.24131 0.98103 0.88679 1.01313 1.68409 1.06969 1.12147 1.33988 1.23868 0.93413 1.06831 0.91023 1.20634 0.76292 0.73249 0.89202 1.93136 1.96226 1.42307 1.84885 1.93150 1.36862 1.91302 1.95630 1.93181 1.81010 1.65809 1.77234 0.93082 0.98888 0.97876 0.90615 0.88606 0.89065 0.88676 0.86917 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 15 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 15 3 Si 0.95 44.67 29.54 68.60 2.03 46.70 15 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 7 C -0.52 -28.27 9.05 25.60 0.23 -28.04 15 8 H 0.06 3.09 5.94 -2.91 -0.02 3.08 15 9 C 0.04 2.06 5.02 29.85 0.15 2.21 15 10 C 0.05 1.98 3.17 45.02 0.14 2.12 15 11 H 0.08 2.85 7.93 -2.39 -0.02 2.83 15 12 C -0.14 -3.99 7.85 31.24 0.25 -3.75 15 13 C 0.01 0.15 7.18 86.41 0.62 0.77 15 14 N -0.49 -17.22 5.80 -883.86 -5.12 -22.35 15 15 C -0.02 -0.65 4.86 86.30 0.42 -0.23 15 16 C 0.46 14.46 3.29 71.98 0.24 14.70 15 17 F -0.18 -5.42 16.48 44.97 0.74 -4.68 15 18 F -0.19 -5.53 17.32 44.97 0.78 -4.75 15 19 F -0.19 -7.27 17.24 44.97 0.78 -6.49 15 20 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 21 H -0.01 -0.42 8.12 -2.39 -0.02 -0.44 15 22 H 0.00 0.16 8.14 -2.38 -0.02 0.14 15 23 H 0.08 2.43 8.08 -2.39 -0.02 2.41 15 24 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.09 2.30 8.14 -2.39 -0.02 2.29 15 26 H 0.10 1.92 7.47 -2.39 -0.02 1.91 15 27 H 0.11 2.58 7.38 -2.38 -0.02 2.56 15 28 H 0.11 3.68 6.28 -2.39 -0.02 3.66 15 Total: -1.00 -63.96 250.80 3.16 -60.80 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: 1.17 Total: -0.83 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 2.51 Total: -11.77 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -4.84 Total: -78.99 kcal Atomic # 9 Polarization: -18.22 SS G_CDS: 2.30 Total: -15.92 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.96 3.16 -60.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260477985.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.561 kcal (2) G-P(sol) polarization free energy of solvation -63.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds