Wall clock time and date at job start Mon Mar 30 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.95941 * 62.85095 * 10 9 7 12 12 C 1.53936 * 113.75954 * 194.50370 * 10 9 7 13 13 C 1.53934 * 86.34129 * 138.03550 * 12 10 9 14 14 N 1.47958 * 86.18148 * 336.27555 * 13 12 10 15 15 C 1.46909 * 110.99954 * 137.58070 * 14 13 12 16 16 C 1.53000 * 109.46646 * 70.64490 * 15 14 13 17 17 F 1.39900 * 109.47166 * 60.00012 * 16 15 14 18 18 F 1.39907 * 109.46722 * 179.97438 * 16 15 14 19 19 F 1.39895 * 109.47306 * 299.99707 * 16 15 14 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 22 22 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 23 23 H 1.09000 * 113.73164 * 252.38722 * 12 10 9 24 24 H 1.08992 * 113.73569 * 23.56993 * 12 10 9 25 25 H 1.08997 * 113.76204 * 90.59414 * 13 12 10 26 26 H 1.09003 * 113.75939 * 221.96406 * 13 12 10 27 27 H 1.08998 * 109.46722 * 190.64148 * 15 14 13 28 28 H 1.08992 * 109.47136 * 310.64528 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.7319 -3.1891 -0.8952 12 6 5.5141 -2.7670 0.3519 13 6 5.1044 -3.9796 1.2071 14 7 3.7609 -3.3622 1.2616 15 6 2.7096 -4.3723 1.0810 16 6 2.6405 -5.2639 2.3224 17 9 2.3468 -4.4803 3.4436 18 9 1.6389 -6.2255 2.1507 19 9 3.8721 -5.9008 2.5083 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 -0.8895 22 1 3.8746 -0.6808 0.8905 23 1 6.1455 -3.0235 -0.4988 24 1 5.9024 -1.9300 0.9321 25 1 5.1311 -4.9265 0.6678 26 1 5.6063 -4.0250 2.1737 27 1 1.7500 -3.8760 0.9362 28 1 2.9385 -4.9827 0.2075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260477992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:30 Heat of formation + Delta-G solvation = -126.493160 kcal Electronic energy + Delta-G solvation = -15937.755501 eV Core-core repulsion = 12767.634262 eV Total energy + Delta-G solvation = -3170.121240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.76051 -47.34563 -47.16215 -39.53640 -32.97266 -31.61360 -29.74750 -26.10211 -24.82939 -22.39898 -21.37900 -19.15975 -18.24040 -18.06046 -17.21093 -16.59717 -15.48422 -14.80798 -14.32519 -14.13480 -14.07359 -13.73337 -13.65807 -13.39781 -13.36330 -12.65400 -12.56944 -12.09812 -11.63423 -11.39114 -11.31396 -10.98323 -10.51043 -10.39403 -9.86888 -9.51466 -9.16402 -8.53616 -8.40959 -6.03787 -4.01111 3.06206 3.32755 3.39761 3.41601 3.94504 4.18319 4.39523 4.46257 4.70314 4.95708 5.11453 5.31454 5.42802 5.60977 5.73040 5.82501 5.91579 6.08306 6.27273 6.46658 6.70306 7.08521 7.14644 7.55926 7.77436 8.50500 8.97479 9.58276 11.09505 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.033440 B = 0.009115 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.119503 B = 3071.253562 C = 3611.001573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.000 4.000 10 C 0.064 3.936 11 H 0.074 0.926 12 C -0.150 4.150 13 C -0.010 4.010 14 N -0.456 5.456 15 C -0.021 4.021 16 C 0.456 3.544 17 F -0.172 7.172 18 F -0.190 7.190 19 F -0.190 7.190 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -9.146 1.558 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.216 1.216 7 C -0.550 4.550 8 H 0.088 0.912 9 C -0.037 4.037 10 C -0.044 4.044 11 H 0.092 0.908 12 C -0.188 4.188 13 C -0.139 4.139 14 N -0.180 5.180 15 C -0.151 4.151 16 C 0.402 3.598 17 F -0.154 7.154 18 F -0.172 7.172 19 F -0.172 7.172 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.464 -8.698 2.168 12.328 hybrid contribution 0.333 0.148 -0.420 0.556 sum 8.797 -8.549 1.748 12.391 Atomic orbital electron populations 1.69906 1.06283 1.26864 1.51243 1.25001 0.94715 0.99128 0.94614 0.86772 0.80217 0.83692 0.78523 1.20277 1.19093 1.21559 1.20957 0.89115 0.94228 1.50657 0.91249 1.19514 0.97573 0.89816 0.96839 1.23455 0.92437 0.98659 0.89818 0.90760 1.23499 0.97441 0.98345 0.99479 1.24059 0.92335 0.96641 1.00861 1.68687 0.99821 1.15338 1.34134 1.23888 1.04012 0.95232 0.91980 1.20624 0.72891 0.79303 0.86998 1.93204 1.93011 1.74142 1.55013 1.93158 1.62133 1.66248 1.95614 1.93129 1.44300 1.83600 1.96163 0.92773 0.95742 0.95817 0.91466 0.89222 0.91535 0.89546 0.84951 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.27 -6.17 6.54 56.52 0.37 -5.80 15 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 7 C -0.51 -13.97 9.60 -34.44 -0.33 -14.30 15 8 H 0.07 2.00 6.44 -52.49 -0.34 1.66 15 9 C 0.00 0.00 4.09 -27.88 -0.11 -0.11 15 10 C 0.06 1.19 3.19 -66.65 -0.21 0.97 15 11 H 0.07 1.31 7.80 -51.93 -0.40 0.91 15 12 C -0.15 -2.22 7.85 -25.80 -0.20 -2.43 15 13 C -0.01 -0.15 6.09 -2.77 -0.02 -0.16 15 14 N -0.46 -8.29 5.92 -230.69 -1.37 -9.66 15 15 C -0.02 -0.35 4.88 -3.82 -0.02 -0.37 15 16 C 0.46 7.38 3.27 37.16 0.12 7.50 15 17 F -0.17 -3.15 17.24 2.25 0.04 -3.11 15 18 F -0.19 -2.99 17.32 2.25 0.04 -2.95 15 19 F -0.19 -2.88 15.11 2.25 0.03 -2.85 15 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 21 H 0.02 0.55 7.20 -51.93 -0.37 0.18 15 22 H 0.02 0.55 7.55 -51.93 -0.39 0.16 15 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.09 1.35 8.08 -51.93 -0.42 0.93 15 25 H 0.07 0.87 7.47 -51.93 -0.39 0.48 15 26 H 0.09 1.21 8.13 -51.93 -0.42 0.79 15 27 H 0.13 2.53 6.67 -51.93 -0.35 2.18 15 28 H 0.07 1.08 7.69 -51.93 -0.40 0.68 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -29.69 245.70 -5.39 -35.08 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -3.07 Total: -3.20 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.87 Total: -7.10 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.59 Total: -36.39 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.11 Total: -8.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.69 -5.39 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260477992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.414 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds