Wall clock time and date at job start Mon Mar 30 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00177 * 2 1 4 4 C 1.50691 * 110.29050 * 302.21040 * 3 2 1 5 5 H 1.08003 * 120.00133 * 121.80370 * 4 3 2 6 6 C 1.37878 * 120.00022 * 301.79943 * 4 3 2 7 7 N 1.31519 * 119.99759 * 351.53044 * 6 4 3 8 8 Si 1.86804 * 120.00039 * 171.53078 * 6 4 3 9 9 H 1.48495 * 109.47065 * 60.00121 * 8 6 4 10 10 H 1.48500 * 109.47173 * 299.99789 * 8 6 4 11 11 H 1.48501 * 109.46917 * 180.02562 * 8 6 4 12 12 C 1.54142 * 110.32422 * 180.02562 * 3 2 1 13 13 C 1.54360 * 101.66186 * 267.51792 * 12 3 2 14 14 C 1.52115 * 104.88991 * 333.65049 * 13 12 3 15 15 S 1.76532 * 139.39589 * 197.35542 * 14 13 12 16 16 C 1.75584 * 91.08169 * 179.97438 * 15 14 13 17 17 C 1.32626 * 109.64699 * 0.02672 * 16 15 14 18 18 C 1.33821 * 110.68080 * 17.33955 * 14 13 12 19 19 H 1.09009 * 109.46889 * 58.06164 * 1 2 3 20 20 H 1.08999 * 109.47315 * 178.06408 * 1 2 3 21 21 H 1.09000 * 109.47200 * 298.06768 * 1 2 3 22 22 H 1.00905 * 110.99439 * 236.04976 * 2 1 3 23 23 H 0.96991 * 120.00191 * 3.00969 * 7 6 4 24 24 H 1.08997 * 110.97097 * 25.70087 * 12 3 2 25 25 H 1.09000 * 110.97534 * 149.47872 * 12 3 2 26 26 H 1.09007 * 110.41486 * 214.76000 * 13 12 3 27 27 H 1.08997 * 110.35623 * 92.51748 * 13 12 3 28 28 H 1.08001 * 125.17313 * 179.97438 * 16 15 14 29 29 H 1.08005 * 122.17916 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4795 2.1293 -1.1959 5 1 0.9174 3.0409 -1.0561 6 6 1.7249 1.6590 -2.4685 7 7 2.5456 0.6472 -2.6487 8 14 0.8918 2.4589 -3.9367 9 1 1.2756 3.8919 -4.0036 10 1 -0.5819 2.3475 -3.7911 11 1 1.3188 1.7729 -5.1826 12 6 3.5368 1.3532 -0.0006 13 6 3.8502 1.4147 1.5095 14 6 2.6475 2.1089 2.1304 15 16 2.2012 2.9364 3.6245 16 6 0.5780 3.2236 3.0199 17 6 0.4596 2.7142 1.8010 18 6 1.6054 2.0896 1.2911 19 1 -0.3633 0.5437 -0.8722 20 1 -0.3634 -1.0271 -0.0347 21 1 -0.3633 0.4835 0.9068 22 1 1.8305 -0.5261 -0.7815 23 1 2.9442 0.2039 -1.8837 24 1 3.9159 0.4316 -0.4423 25 1 3.9371 2.2254 -0.5176 26 1 4.7561 1.9947 1.6866 27 1 3.9591 0.4091 1.9155 28 1 -0.2051 3.7361 3.5588 29 1 -0.4599 2.7778 1.2379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539361.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:23 Heat of formation + Delta-G solvation = 45.143166 kcal Electronic energy + Delta-G solvation = -13694.011716 eV Core-core repulsion = 11515.942798 eV Total energy + Delta-G solvation = -2178.068919 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08509 -35.19946 -32.83427 -31.69925 -27.06710 -26.97799 -24.41724 -23.14875 -21.45972 -19.85308 -18.09225 -16.77560 -16.27182 -14.77325 -14.19729 -13.99235 -13.72482 -13.20272 -12.68138 -12.31525 -12.07848 -11.73513 -11.43297 -11.14120 -10.87296 -10.73452 -10.61033 -10.40855 -10.15115 -10.07899 -9.78227 -9.23142 -8.41919 -7.92607 -7.68540 -7.07353 -6.38253 -4.21959 1.70244 2.13690 2.60988 3.36293 3.37338 3.50576 3.56714 4.42453 5.17317 5.30005 5.49635 5.70776 5.81678 6.03394 6.11756 6.23345 6.36220 6.39513 6.62155 6.72324 6.83769 6.94682 6.98459 7.13582 7.19362 7.39430 7.90169 8.15638 8.48117 8.63141 8.74989 9.47195 10.87642 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.036360 B = 0.010568 C = 0.009965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.901549 B = 2648.849447 C = 2809.243549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.690 5.690 3 C 0.273 3.727 4 C -0.611 4.611 5 H 0.050 0.950 6 C 0.030 3.970 7 N -0.911 5.911 8 Si 1.063 2.937 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.282 1.282 12 C -0.097 4.097 13 C -0.036 4.036 14 C -0.204 4.204 15 S 0.056 5.944 16 C -0.232 4.232 17 C -0.095 4.095 18 C -0.063 4.063 19 H 0.034 0.966 20 H 0.037 0.963 21 H 0.046 0.954 22 H 0.339 0.661 23 H 0.274 0.726 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.157 0.843 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 1.974 7.466 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.323 5.323 3 C 0.182 3.818 4 C -0.651 4.651 5 H 0.068 0.932 6 C -0.175 4.175 7 N -0.550 5.550 8 Si 0.891 3.109 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.207 1.207 12 C -0.137 4.137 13 C -0.076 4.076 14 C -0.321 4.321 15 S 0.319 5.681 16 C -0.367 4.367 17 C -0.126 4.126 18 C -0.075 4.075 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.159 0.841 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.174 0.826 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.604 2.208 7.886 8.211 hybrid contribution -1.045 0.186 -0.444 1.150 sum -1.649 2.394 7.442 7.990 Atomic orbital electron populations 1.21886 0.89958 0.98563 1.00375 1.61017 1.07034 1.15412 1.48787 1.18148 0.90254 0.85246 0.88172 1.22392 1.38879 1.11655 0.92172 0.93170 1.25744 0.94997 0.96446 1.00349 1.70915 1.26605 1.22331 1.35117 0.83616 0.75815 0.75649 0.75808 1.21417 1.21476 1.20698 1.22471 0.97499 1.01614 0.92158 1.20842 0.92485 0.98022 0.96250 1.25754 1.02806 1.07044 0.96512 1.83502 1.07832 1.58277 1.18469 1.25058 0.99869 1.11310 1.00444 1.19803 0.99509 0.98584 0.94704 1.20700 0.91460 0.97728 0.97584 0.94732 0.94430 0.93493 0.84094 0.91168 0.91224 0.91181 0.92493 0.91032 0.82560 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.16 60.07 0.61 1.53 15 2 N -0.69 -16.02 6.42 -107.85 -0.69 -16.72 15 3 C 0.27 6.52 0.41 -132.26 -0.05 6.47 15 4 C -0.61 -16.14 6.52 -34.44 -0.22 -16.37 15 5 H 0.05 1.38 7.78 -52.48 -0.41 0.97 15 6 C 0.03 0.80 5.25 -17.82 -0.09 0.70 15 7 N -0.91 -25.08 12.93 55.43 0.72 -24.36 15 8 Si 1.06 24.21 29.91 -169.99 -5.08 19.13 15 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 12 C -0.10 -2.19 5.20 -25.42 -0.13 -2.32 15 13 C -0.04 -0.71 6.81 -26.47 -0.18 -0.89 15 14 C -0.20 -4.19 7.35 -35.16 -0.26 -4.45 15 15 S 0.06 0.96 23.35 -107.50 -2.51 -1.55 15 16 C -0.23 -3.99 11.18 28.83 0.32 -3.67 15 17 C -0.09 -1.90 9.01 -40.78 -0.37 -2.26 15 18 C -0.06 -1.41 4.66 -104.42 -0.49 -1.90 15 19 H 0.03 0.81 6.99 -51.92 -0.36 0.44 15 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.05 0.98 6.36 -51.93 -0.33 0.65 15 22 H 0.34 8.22 6.31 -39.29 -0.25 7.97 15 23 H 0.27 7.31 3.64 -40.82 -0.15 7.16 15 24 H 0.07 1.57 6.53 -51.93 -0.34 1.23 15 25 H 0.07 1.67 7.92 -51.93 -0.41 1.26 15 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 28 H 0.16 2.16 8.06 -52.49 -0.42 1.74 15 29 H 0.13 2.52 8.00 -52.48 -0.42 2.10 15 LS Contribution 246.48 15.07 3.71 3.71 Total: -1.00 -27.78 246.48 -7.87 -35.65 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.15 Total: 7.30 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -0.86 Total: -23.16 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.02 Total: -41.08 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.78 -7.87 -35.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539361.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.793 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds