Wall clock time and date at job start Mon Mar 30 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00177 * 2 1 4 4 C 1.50691 * 110.29050 * 302.21040 * 3 2 1 5 5 H 1.08003 * 120.00133 * 121.80370 * 4 3 2 6 6 C 1.37878 * 120.00022 * 301.79943 * 4 3 2 7 7 N 1.31519 * 119.99759 * 351.53044 * 6 4 3 8 8 Si 1.86804 * 120.00039 * 171.53078 * 6 4 3 9 9 H 1.48495 * 109.47065 * 60.00121 * 8 6 4 10 10 H 1.48500 * 109.47173 * 299.99789 * 8 6 4 11 11 H 1.48501 * 109.46917 * 180.02562 * 8 6 4 12 12 C 1.54142 * 110.32422 * 180.02562 * 3 2 1 13 13 C 1.54360 * 101.66186 * 267.51792 * 12 3 2 14 14 C 1.52115 * 104.88991 * 333.65049 * 13 12 3 15 15 S 1.76532 * 139.39589 * 197.35542 * 14 13 12 16 16 C 1.75584 * 91.08169 * 179.97438 * 15 14 13 17 17 C 1.32626 * 109.64699 * 0.02672 * 16 15 14 18 18 C 1.33821 * 110.68080 * 17.33955 * 14 13 12 19 19 H 1.09009 * 109.46889 * 58.06164 * 1 2 3 20 20 H 1.08999 * 109.47315 * 178.06408 * 1 2 3 21 21 H 1.09000 * 109.47200 * 298.06768 * 1 2 3 22 22 H 1.00905 * 110.99439 * 236.04976 * 2 1 3 23 23 H 0.96991 * 120.00191 * 3.00969 * 7 6 4 24 24 H 1.08997 * 110.97097 * 25.70087 * 12 3 2 25 25 H 1.09000 * 110.97534 * 149.47872 * 12 3 2 26 26 H 1.09007 * 110.41486 * 214.76000 * 13 12 3 27 27 H 1.08997 * 110.35623 * 92.51748 * 13 12 3 28 28 H 1.08001 * 125.17313 * 179.97438 * 16 15 14 29 29 H 1.08005 * 122.17916 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4795 2.1293 -1.1959 5 1 0.9174 3.0409 -1.0561 6 6 1.7249 1.6590 -2.4685 7 7 2.5456 0.6472 -2.6487 8 14 0.8918 2.4589 -3.9367 9 1 1.2756 3.8919 -4.0036 10 1 -0.5819 2.3475 -3.7911 11 1 1.3188 1.7729 -5.1826 12 6 3.5368 1.3532 -0.0006 13 6 3.8502 1.4147 1.5095 14 6 2.6475 2.1089 2.1304 15 16 2.2012 2.9364 3.6245 16 6 0.5780 3.2236 3.0199 17 6 0.4596 2.7142 1.8010 18 6 1.6054 2.0896 1.2911 19 1 -0.3633 0.5437 -0.8722 20 1 -0.3634 -1.0271 -0.0347 21 1 -0.3633 0.4835 0.9068 22 1 1.8305 -0.5261 -0.7815 23 1 2.9442 0.2039 -1.8837 24 1 3.9159 0.4316 -0.4423 25 1 3.9371 2.2254 -0.5176 26 1 4.7561 1.9947 1.6866 27 1 3.9591 0.4091 1.9155 28 1 -0.2051 3.7361 3.5588 29 1 -0.4599 2.7778 1.2379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539361.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:23 Heat of formation + Delta-G solvation = 28.405181 kcal Electronic energy + Delta-G solvation = -13694.737530 eV Core-core repulsion = 11515.942798 eV Total energy + Delta-G solvation = -2178.794732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74369 -36.89794 -34.47400 -33.64400 -28.84398 -28.60417 -26.31787 -24.86826 -22.99350 -21.56597 -19.95114 -18.39904 -17.86607 -16.49668 -15.93426 -15.74677 -15.39546 -14.82658 -14.37835 -14.08575 -13.78007 -13.44462 -13.07844 -12.83603 -12.67375 -12.34809 -12.28332 -12.03670 -11.95817 -11.79754 -11.45058 -11.13621 -10.41282 -9.39213 -9.19299 -8.94773 -8.41690 -6.30753 0.22546 0.70529 1.15357 1.50686 1.54736 1.75279 1.92795 2.53669 3.15335 3.72505 3.87921 4.05410 4.27071 4.40070 4.57657 4.66893 4.70566 4.86481 4.89323 5.10946 5.13599 5.17336 5.30595 5.35104 5.59654 5.74144 5.97012 6.16170 6.51886 6.71093 6.76397 7.43682 8.80639 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.036360 B = 0.010568 C = 0.009965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.901549 B = 2648.849447 C = 2809.243549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.687 5.687 3 C 0.262 3.738 4 C -0.617 4.617 5 H 0.031 0.969 6 C -0.009 4.009 7 N -0.932 5.932 8 Si 1.100 2.900 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.283 1.283 12 C -0.095 4.095 13 C -0.029 4.029 14 C -0.228 4.228 15 S 0.124 5.876 16 C -0.214 4.214 17 C -0.128 4.128 18 C -0.095 4.095 19 H 0.010 0.990 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.329 0.671 23 H 0.271 0.729 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.195 0.805 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 2.655 9.250 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.318 5.318 3 C 0.171 3.829 4 C -0.657 4.657 5 H 0.049 0.951 6 C -0.210 4.210 7 N -0.572 5.572 8 Si 0.924 3.076 9 H -0.205 1.205 10 H -0.204 1.204 11 H -0.208 1.208 12 C -0.135 4.135 13 C -0.069 4.069 14 C -0.345 4.345 15 S 0.388 5.612 16 C -0.348 4.348 17 C -0.159 4.159 18 C -0.106 4.106 19 H 0.029 0.971 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.148 0.852 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.212 0.788 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.968 2.893 9.692 10.161 hybrid contribution -0.944 0.012 -0.897 1.302 sum -1.912 2.905 8.795 9.458 Atomic orbital electron populations 1.21871 0.89183 0.99618 0.99561 1.61067 1.07731 1.15067 1.47927 1.18211 0.90848 0.85284 0.88565 1.22589 1.38377 1.11122 0.93626 0.95079 1.26760 0.95041 0.96540 1.02673 1.70972 1.27741 1.23262 1.35198 0.83114 0.75659 0.75346 0.73432 1.20512 1.20362 1.20840 1.22290 0.96839 0.99973 0.94434 1.20753 0.93289 0.99090 0.93768 1.26027 1.02376 1.07507 0.98562 1.83264 1.06661 1.56081 1.15195 1.25556 1.01034 1.08932 0.99291 1.19809 0.99075 1.00820 0.96218 1.20713 0.93225 0.99330 0.97381 0.97123 0.92260 0.92811 0.85210 0.91478 0.92096 0.93549 0.90312 0.89987 0.78794 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.08 10.16 127.69 1.30 3.38 15 2 N -0.69 -32.18 6.42 -495.14 -3.18 -35.36 15 3 C 0.26 12.68 0.41 3.10 0.00 12.68 15 4 C -0.62 -33.35 6.52 25.60 0.17 -33.18 15 5 H 0.03 1.75 7.78 -2.91 -0.02 1.72 15 6 C -0.01 -0.50 5.25 84.65 0.44 -0.05 15 7 N -0.93 -52.35 12.93 21.45 0.28 -52.07 15 8 Si 1.10 49.37 29.91 68.60 2.05 51.43 15 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 12 C -0.10 -4.36 5.20 31.44 0.16 -4.20 15 13 C -0.03 -1.12 6.81 30.76 0.21 -0.91 15 14 C -0.23 -8.94 7.35 25.14 0.18 -8.76 15 15 S 0.12 3.81 23.35 -56.49 -1.32 2.49 15 16 C -0.21 -6.61 11.18 66.66 0.75 -5.87 15 17 C -0.13 -4.97 9.01 21.56 0.19 -4.77 15 18 C -0.09 -4.16 4.66 -19.73 -0.09 -4.25 15 19 H 0.01 0.49 6.99 -2.38 -0.02 0.47 15 20 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.05 2.23 6.36 -2.39 -0.02 2.22 15 22 H 0.33 16.29 6.31 -89.69 -0.57 15.72 15 23 H 0.27 14.89 3.64 -92.72 -0.34 14.55 15 24 H 0.06 2.83 6.53 -2.39 -0.02 2.81 15 25 H 0.05 2.28 7.92 -2.39 -0.02 2.26 15 26 H 0.08 2.61 8.14 -2.38 -0.02 2.59 15 27 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.20 4.42 8.06 -2.91 -0.02 4.40 15 29 H 0.13 4.81 8.00 -2.91 -0.02 4.79 15 Total: -1.00 -59.41 246.48 2.17 -57.24 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.02 Total: 22.20 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 3.32 Total: -45.92 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.90 Total: -87.43 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.43 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.32 Total: 2.49 kcal Total: -59.41 2.17 -57.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539361.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.645 kcal (2) G-P(sol) polarization free energy of solvation -59.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds