Wall clock time and date at job start Mon Mar 30 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48495 * 109.47400 * 240.00121 * 3 2 1 5 5 H 1.48501 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 119.99942 * 3 2 1 7 7 C 1.39724 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.41477 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.47601 * 128.73687 * 0.02736 * 9 7 2 11 11 N 1.29849 * 105.36817 * 179.97438 * 10 9 7 12 12 O 1.20568 * 112.93760 * 0.02562 * 11 10 9 13 13 C 1.33764 * 113.30131 * 359.97438 * 12 11 10 14 14 C 1.50701 * 127.05863 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.51669 * 179.85334 * 14 13 12 16 16 C 1.53174 * 109.52231 * 59.66622 * 14 13 12 17 17 C 1.53186 * 109.03289 * 183.11202 * 16 14 13 18 18 C 1.53087 * 109.16406 * 56.97730 * 17 16 14 19 19 O 1.42897 * 109.41880 * 302.39367 * 18 17 16 20 20 C 1.42902 * 114.09982 * 61.15495 * 19 18 17 21 21 H 0.97000 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.08000 * 127.31753 * 359.97438 * 10 9 7 23 23 H 1.08995 * 109.54313 * 302.97276 * 16 14 13 24 24 H 1.08997 * 109.54774 * 63.24470 * 16 14 13 25 25 H 1.08993 * 109.52218 * 297.07142 * 17 16 14 26 26 H 1.09000 * 109.56770 * 176.91677 * 17 16 14 27 27 H 1.08998 * 109.47672 * 182.40625 * 18 17 16 28 28 H 1.09007 * 109.48650 * 62.37861 * 18 17 16 29 29 H 1.09006 * 109.48015 * 178.86461 * 20 19 18 30 30 H 1.09000 * 109.48136 * 58.82575 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6966 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0088 -1.2100 -0.0005 8 1 3.0888 -1.2100 -0.0001 9 6 1.3016 -2.4353 -0.0005 10 6 -0.1573 -2.6596 -0.0006 11 7 -0.3071 -3.9495 -0.0011 12 8 0.7416 -4.5443 -0.0009 13 6 1.8080 -3.7368 -0.0007 14 6 3.2580 -4.1472 -0.0010 15 1 3.8882 -3.2579 -0.0034 16 6 3.5518 -4.9878 -1.2474 17 6 5.0070 -5.4637 -1.1973 18 6 5.2355 -6.2463 0.0985 19 8 4.9144 -5.4172 1.2171 20 6 3.5541 -4.9807 1.2486 21 1 -0.4850 0.8400 0.0004 22 1 -0.9350 -1.9102 -0.0002 23 1 2.8866 -5.8508 -1.2702 24 1 3.3968 -4.3824 -2.1404 25 1 5.6734 -4.6016 -1.2244 26 1 5.2100 -6.1081 -2.0527 27 1 6.2803 -6.5509 0.1597 28 1 4.5979 -7.1305 0.1065 29 1 3.3876 -4.3735 2.1384 30 1 2.8944 -5.8481 1.2715 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:51 Heat of formation + Delta-G solvation = -16.705619 kcal Electronic energy + Delta-G solvation = -15398.764296 eV Core-core repulsion = 12775.260542 eV Total energy + Delta-G solvation = -2623.503754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.65116 -38.81000 -34.29976 -33.56145 -31.58421 -31.20904 -28.82298 -25.96142 -24.56186 -23.20569 -21.45869 -20.10497 -18.97173 -17.28482 -16.06563 -15.86817 -15.41079 -15.13117 -14.88629 -14.22003 -13.79661 -13.33989 -13.04864 -12.50494 -12.20821 -11.61962 -11.44445 -11.36500 -11.11621 -10.82065 -10.55119 -10.34824 -10.05399 -9.92139 -9.69053 -9.32245 -9.08379 -8.36525 -7.74652 -6.82824 -4.45363 2.85018 3.03611 3.06660 3.25412 3.88434 3.96552 4.22520 4.89213 5.14623 5.18446 5.26000 5.33533 5.55370 5.66777 5.83257 5.97963 6.06851 6.11052 6.25936 6.30014 6.36687 6.61113 6.71556 6.83436 7.04427 7.18767 7.37109 7.60202 7.77940 8.23960 8.62551 8.77588 10.17388 10.18682 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029575 B = 0.009131 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.510596 B = 3065.794899 C = 3681.797551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.071 3.929 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.428 4.428 8 H 0.081 0.919 9 C 0.025 3.975 10 C -0.040 4.040 11 N -0.401 5.401 12 O 0.065 5.935 13 C -0.256 4.256 14 C 0.013 3.987 15 H 0.091 0.909 16 C -0.116 4.116 17 C -0.156 4.156 18 C 0.061 3.939 19 O -0.388 6.388 20 C 0.067 3.933 21 H 0.282 0.718 22 H 0.193 0.807 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -4.707 -0.948 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.145 4.145 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.459 4.459 8 H 0.099 0.901 9 C 0.020 3.980 10 C -0.220 4.220 11 N -0.106 5.106 12 O -0.004 6.004 13 C -0.317 4.317 14 C -0.007 4.007 15 H 0.109 0.891 16 C -0.154 4.154 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.307 6.307 20 C -0.010 4.010 21 H 0.092 0.908 22 H 0.210 0.790 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.187 -5.272 -0.806 8.169 hybrid contribution 0.495 1.575 -0.301 1.678 sum 6.682 -3.697 -1.107 7.717 Atomic orbital electron populations 1.69621 1.07518 1.29310 1.38051 1.25869 0.94934 1.01474 0.92206 0.86129 0.79700 0.79592 0.79909 1.18961 1.20306 1.18885 1.18719 0.94095 0.88450 1.44660 0.90112 1.19866 0.90804 0.92138 0.95164 1.26669 0.98050 0.90989 1.06272 1.73079 1.06685 1.10730 1.20116 1.84034 1.09726 1.35083 1.71542 1.23263 0.88902 0.89356 1.30169 1.19522 0.88822 0.98361 0.94019 0.89104 1.21686 0.94810 0.99902 0.98965 1.22224 0.98240 1.00877 0.97989 1.22514 1.00325 0.92588 0.86191 1.87887 1.28982 1.68594 1.45267 1.22784 0.81611 0.97584 0.99008 0.90762 0.78985 0.91957 0.91461 0.91201 0.91456 0.89610 0.93556 0.88785 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.77 10.66 55.54 0.59 -20.18 16 2 C 0.07 1.75 5.49 -17.35 -0.10 1.65 16 3 Si 0.92 18.57 29.56 -169.99 -5.02 13.55 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.43 -11.17 9.23 -37.79 -0.35 -11.52 16 8 H 0.08 2.00 7.18 -52.49 -0.38 1.62 16 9 C 0.03 0.67 6.24 -104.32 -0.65 0.02 16 10 C -0.04 -1.07 11.25 -14.57 -0.16 -1.23 16 11 N -0.40 -10.50 11.96 32.03 0.38 -10.11 16 12 O 0.06 1.62 11.06 17.99 0.20 1.82 16 13 C -0.26 -6.13 6.18 -33.78 -0.21 -6.34 16 14 C 0.01 0.25 2.80 -91.63 -0.26 -0.01 16 15 H 0.09 1.86 7.27 -51.93 -0.38 1.48 16 16 C -0.12 -1.96 5.30 -26.54 -0.14 -2.10 16 17 C -0.16 -2.12 6.14 -26.59 -0.16 -2.28 16 18 C 0.06 0.82 6.84 37.20 0.25 1.07 16 19 O -0.39 -6.52 10.77 -35.23 -0.38 -6.90 16 20 C 0.07 1.20 6.11 37.21 0.23 1.42 16 21 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 22 H 0.19 5.18 6.30 -52.49 -0.33 4.85 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 255.07 15.07 3.84 3.84 Total: -1.00 -27.70 255.07 -5.53 -33.23 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.60 Total: 4.06 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.55 Total: -19.31 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.97 Total: -30.29 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.18 Total: -5.08 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.70 -5.53 -33.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.529 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds