Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48495 * 109.47400 * 240.00121 * 3 2 1 5 5 H 1.48501 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 119.99942 * 3 2 1 7 7 C 1.39724 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.41477 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.47601 * 128.73687 * 0.02736 * 9 7 2 11 11 N 1.29849 * 105.36817 * 179.97438 * 10 9 7 12 12 O 1.20568 * 112.93760 * 0.02562 * 11 10 9 13 13 C 1.33764 * 113.30131 * 359.97438 * 12 11 10 14 14 C 1.50701 * 127.05863 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.51669 * 179.85334 * 14 13 12 16 16 C 1.53174 * 109.52231 * 59.66622 * 14 13 12 17 17 C 1.53186 * 109.03289 * 183.11202 * 16 14 13 18 18 C 1.53087 * 109.16406 * 56.97730 * 17 16 14 19 19 O 1.42897 * 109.41880 * 302.39367 * 18 17 16 20 20 C 1.42902 * 114.09982 * 61.15495 * 19 18 17 21 21 H 0.97000 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.08000 * 127.31753 * 359.97438 * 10 9 7 23 23 H 1.08995 * 109.54313 * 302.97276 * 16 14 13 24 24 H 1.08997 * 109.54774 * 63.24470 * 16 14 13 25 25 H 1.08993 * 109.52218 * 297.07142 * 17 16 14 26 26 H 1.09000 * 109.56770 * 176.91677 * 17 16 14 27 27 H 1.08998 * 109.47672 * 182.40625 * 18 17 16 28 28 H 1.09007 * 109.48650 * 62.37861 * 18 17 16 29 29 H 1.09006 * 109.48015 * 178.86461 * 20 19 18 30 30 H 1.09000 * 109.48136 * 58.82575 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6966 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0088 -1.2100 -0.0005 8 1 3.0888 -1.2100 -0.0001 9 6 1.3016 -2.4353 -0.0005 10 6 -0.1573 -2.6596 -0.0006 11 7 -0.3071 -3.9495 -0.0011 12 8 0.7416 -4.5443 -0.0009 13 6 1.8080 -3.7368 -0.0007 14 6 3.2580 -4.1472 -0.0010 15 1 3.8882 -3.2579 -0.0034 16 6 3.5518 -4.9878 -1.2474 17 6 5.0070 -5.4637 -1.1973 18 6 5.2355 -6.2463 0.0985 19 8 4.9144 -5.4172 1.2171 20 6 3.5541 -4.9807 1.2486 21 1 -0.4850 0.8400 0.0004 22 1 -0.9350 -1.9102 -0.0002 23 1 2.8866 -5.8508 -1.2702 24 1 3.3968 -4.3824 -2.1404 25 1 5.6734 -4.6016 -1.2244 26 1 5.2100 -6.1081 -2.0527 27 1 6.2803 -6.5509 0.1597 28 1 4.5979 -7.1305 0.1065 29 1 3.3876 -4.3735 2.1384 30 1 2.8944 -5.8481 1.2715 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -33.066805 kcal Electronic energy + Delta-G solvation = -15399.473770 eV Core-core repulsion = 12775.260542 eV Total energy + Delta-G solvation = -2624.213228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.70210 -40.12586 -36.17680 -35.07595 -33.24167 -32.96985 -30.58570 -27.89295 -25.86539 -24.67422 -23.40662 -21.65407 -20.71147 -19.22034 -17.79828 -17.65517 -16.89353 -16.70760 -16.48731 -15.57482 -15.50616 -14.74586 -14.61230 -14.32898 -13.52839 -13.35995 -13.03970 -12.96731 -12.79212 -12.21544 -12.00952 -11.95266 -11.63196 -11.51100 -11.27048 -11.23715 -10.50107 -10.35862 -9.67771 -8.68874 -6.42800 1.05698 1.39654 1.46267 1.52109 1.98788 2.19873 2.86768 3.13828 3.22641 3.89077 4.02688 4.08793 4.15074 4.22792 4.35434 4.55977 4.60042 4.74036 4.82724 4.88097 4.99170 5.12323 5.22342 5.29479 5.32264 5.45482 5.50557 5.71716 6.24806 6.31391 6.66159 6.83118 8.13870 8.34539 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029575 B = 0.009131 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.510596 B = 3065.794899 C = 3681.797551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.027 3.973 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.458 4.458 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.412 5.412 12 O 0.073 5.927 13 C -0.240 4.240 14 C 0.010 3.990 15 H 0.081 0.919 16 C -0.113 4.113 17 C -0.147 4.147 18 C 0.052 3.948 19 O -0.397 6.397 20 C 0.077 3.923 21 H 0.289 0.711 22 H 0.186 0.814 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -4.998 -1.263 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.104 0.896 9 C -0.018 4.018 10 C -0.241 4.241 11 N -0.116 5.116 12 O 0.003 5.997 13 C -0.302 4.302 14 C -0.010 4.010 15 H 0.099 0.901 16 C -0.151 4.151 17 C -0.184 4.184 18 C -0.024 4.024 19 O -0.317 6.317 20 C 0.000 4.000 21 H 0.100 0.900 22 H 0.203 0.797 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.169 -5.577 -1.124 9.955 hybrid contribution -0.116 1.552 -0.220 1.572 sum 8.053 -4.025 -1.344 9.103 Atomic orbital electron populations 1.69681 1.08938 1.30664 1.38101 1.26819 0.95762 1.04795 0.91171 0.85025 0.78378 0.74869 0.80120 1.18265 1.19346 1.18286 1.19007 0.94515 0.89129 1.46169 0.89604 1.20293 0.90950 0.93684 0.96890 1.26665 0.98526 0.91202 1.07725 1.73046 1.07223 1.10458 1.20877 1.84001 1.09881 1.35163 1.70678 1.24024 0.90318 0.88588 1.27313 1.19685 0.85630 0.98972 0.96666 0.90050 1.21640 0.97540 0.99156 0.96776 1.22188 0.95328 1.01477 0.99448 1.22840 1.02440 0.92271 0.84835 1.87883 1.27688 1.69213 1.46869 1.22526 0.82763 0.97228 0.97483 0.90011 0.79695 0.91939 0.92475 0.91172 0.88391 0.86504 0.92449 0.89739 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.70 10.66 21.79 0.23 -43.47 16 2 C 0.03 1.34 5.49 85.17 0.47 1.81 16 3 Si 1.00 37.64 29.56 68.60 2.03 39.66 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.46 -24.24 9.23 23.43 0.22 -24.03 16 8 H 0.09 4.29 7.18 -2.91 -0.02 4.27 16 9 C -0.01 -0.72 6.24 -19.67 -0.12 -0.84 16 10 C -0.06 -3.47 11.25 87.46 0.98 -2.49 16 11 N -0.41 -21.95 11.96 -53.09 -0.63 -22.58 16 12 O 0.07 3.64 11.06 74.64 0.83 4.46 16 13 C -0.24 -11.62 6.18 26.03 0.16 -11.45 16 14 C 0.01 0.40 2.80 -11.45 -0.03 0.37 16 15 H 0.08 3.31 7.27 -2.39 -0.02 3.29 16 16 C -0.11 -3.64 5.30 30.71 0.16 -3.48 16 17 C -0.15 -3.51 6.14 30.69 0.19 -3.32 16 18 C 0.05 1.22 6.84 72.01 0.49 1.71 16 19 O -0.40 -12.40 10.77 -148.98 -1.60 -14.00 16 20 C 0.08 2.68 6.11 72.01 0.44 3.12 16 21 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 22 H 0.19 10.43 6.30 -2.91 -0.02 10.41 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 3.05 8.14 -2.38 -0.02 3.04 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -59.78 255.07 4.94 -54.83 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.14 Total: 19.70 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.96 Total: -38.61 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.40 Total: -66.05 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.78 Total: -9.54 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.66 kcal Total: -59.78 4.94 -54.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.766 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds