Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29854 * 127.31272 * 2 1 4 4 O 1.20565 * 112.93509 * 180.27232 * 3 2 1 5 5 C 1.33760 * 113.30646 * 359.71816 * 4 3 2 6 6 C 1.50694 * 127.06397 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.45983 * 182.64664 * 6 5 4 8 8 C 1.54514 * 110.51499 * 60.03952 * 6 5 4 9 9 C 1.54472 * 104.06360 * 241.35619 * 8 6 5 10 10 O 1.44428 * 104.80699 * 23.97480 * 9 8 6 11 11 C 1.44424 * 105.27500 * 319.49138 * 10 9 8 12 12 C 1.39660 * 105.87256 * 359.97438 * 5 4 3 13 13 C 1.41474 * 128.74392 * 179.97438 * 12 5 4 14 14 H 1.07997 * 119.99903 * 329.97724 * 13 12 5 15 15 C 1.39727 * 119.99937 * 149.97213 * 13 12 5 16 16 N 1.31005 * 120.00615 * 334.73087 * 15 13 12 17 17 Si 1.86804 * 119.99608 * 154.72451 * 15 13 12 18 18 H 1.48491 * 109.47432 * 270.00226 * 17 15 13 19 19 H 1.48506 * 109.46794 * 150.00519 * 17 15 13 20 20 H 1.48500 * 109.47254 * 30.00872 * 17 15 13 21 21 H 1.08996 * 109.46952 * 273.40868 * 1 2 3 22 22 H 1.08993 * 109.47505 * 33.41658 * 1 2 3 23 23 H 1.09006 * 109.46930 * 153.41112 * 1 2 3 24 24 H 1.08998 * 110.50576 * 0.02562 * 8 6 5 25 25 H 1.08996 * 110.51178 * 122.57233 * 8 6 5 26 26 H 1.09001 * 110.37583 * 142.80686 * 9 8 6 27 27 H 1.09007 * 110.37499 * 265.14640 * 9 8 6 28 28 H 1.08999 * 110.36838 * 281.67557 * 11 10 9 29 29 H 1.09000 * 110.37444 * 159.34027 * 11 10 9 30 30 H 0.97003 * 119.99290 * 354.12467 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2941 1.0328 0.0000 4 8 3.4620 0.7334 -0.0053 5 6 3.6696 -0.5880 -0.0038 6 6 4.9985 -1.2986 -0.0097 7 1 4.8532 -2.3780 -0.0539 8 6 5.8236 -0.9142 1.2389 9 6 7.0905 -0.2459 0.6604 10 8 6.6940 0.2294 -0.6445 11 6 5.8646 -0.8171 -1.1948 12 6 2.4019 -1.1738 0.0042 13 6 2.0610 -2.5469 0.0083 14 1 2.7142 -3.2668 -0.4623 15 6 0.8793 -2.9716 0.6211 16 7 0.3473 -2.2587 1.5829 17 14 0.0580 -4.5558 0.0688 18 1 -0.9062 -4.2597 -1.0209 19 1 -0.6628 -5.1654 1.2153 20 1 1.0899 -5.5018 -0.4266 21 1 -0.3633 0.0611 1.0258 22 1 -0.3634 0.8577 -0.5659 23 1 -0.3633 -0.9190 -0.4600 24 1 5.2701 -0.2105 1.8605 25 1 6.0861 -1.8034 1.8119 26 1 7.4007 0.5882 1.2899 27 1 7.8963 -0.9744 0.5701 28 1 6.4824 -1.6331 -1.5696 29 1 5.2330 -0.4219 -1.9904 30 1 0.8164 -1.4829 1.9279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260714355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -13.024125 kcal Electronic energy + Delta-G solvation = -15588.040886 eV Core-core repulsion = 12964.696774 eV Total energy + Delta-G solvation = -2623.344113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.88002 -38.77212 -34.83210 -32.68560 -31.84799 -29.77028 -28.24960 -27.46776 -25.26433 -22.60799 -21.25839 -21.15797 -18.30469 -17.66886 -16.12142 -15.86432 -15.76266 -15.14645 -14.52350 -14.11429 -13.65686 -12.78793 -12.59979 -12.33499 -12.04443 -11.85633 -11.64954 -11.21565 -11.03134 -10.97756 -10.79278 -10.44080 -10.24262 -10.01830 -9.47891 -9.36455 -9.03907 -8.29320 -7.79485 -7.16350 -4.46357 2.87875 3.16097 3.17210 3.33595 3.73341 4.03028 4.37901 4.66501 4.93579 5.22134 5.37597 5.40473 5.53338 5.67658 5.69828 5.92001 6.02009 6.07883 6.18400 6.46823 6.51926 6.55842 6.66460 6.75898 6.94326 7.17890 7.32204 7.37772 7.85391 7.94134 8.49977 8.83988 9.97323 10.11509 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.009751 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.482983 B = 2870.748143 C = 3391.819596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.054 4.054 3 N -0.384 5.384 4 O 0.085 5.915 5 C -0.237 4.237 6 C 0.009 3.991 7 H 0.100 0.900 8 C -0.149 4.149 9 C 0.046 3.954 10 O -0.375 6.375 11 C 0.049 3.951 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.077 0.923 15 C 0.041 3.959 16 N -0.807 5.807 17 Si 1.067 2.933 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.066 0.934 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -2.018 -1.283 6.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.214 4.214 3 N -0.087 5.087 4 O 0.013 5.987 5 C -0.298 4.298 6 C -0.010 4.010 7 H 0.118 0.882 8 C -0.187 4.187 9 C -0.031 4.031 10 O -0.294 6.294 11 C -0.028 4.028 12 C 0.015 3.985 13 C -0.546 4.546 14 H 0.095 0.905 15 C -0.179 4.179 16 N -0.432 5.432 17 Si 0.892 3.108 18 H -0.202 1.202 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.259 -1.452 -1.103 4.633 hybrid contribution 1.167 -0.052 -0.084 1.171 sum 5.426 -1.503 -1.187 5.754 Atomic orbital electron populations 1.19899 0.87585 1.01289 1.01704 1.24664 0.97364 0.89909 1.09455 1.73008 0.90499 1.25605 1.19590 1.84115 1.19542 1.24486 1.70583 1.23355 0.95612 0.82474 1.28330 1.20282 0.88632 0.98728 0.93402 0.88222 1.23049 0.95975 1.01053 0.98582 1.23371 0.96166 0.98463 0.85099 1.89097 1.68420 1.41417 1.30473 1.23590 0.91955 0.90210 0.97021 1.19743 0.88525 0.93791 0.96472 1.19491 1.08414 0.90603 1.36124 0.90517 1.26772 0.94416 1.03935 0.92773 1.70518 1.40154 1.15110 1.17393 0.83596 0.76401 0.73956 0.76892 1.20182 1.20348 1.20319 0.91517 0.93481 0.90831 0.90499 0.90852 0.89690 0.92894 0.92710 0.89169 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.08 8.60 36.01 0.31 -0.77 16 2 C -0.05 -1.41 6.77 -79.61 -0.54 -1.95 16 3 N -0.38 -10.00 11.96 34.99 0.42 -9.58 16 4 O 0.09 2.16 11.06 18.00 0.20 2.36 16 5 C -0.24 -5.71 5.91 -33.78 -0.20 -5.90 16 6 C 0.01 0.18 3.57 -90.20 -0.32 -0.14 16 7 H 0.10 1.91 7.70 -51.93 -0.40 1.51 16 8 C -0.15 -2.51 6.73 -25.16 -0.17 -2.67 16 9 C 0.05 0.69 7.63 37.93 0.29 0.98 16 10 O -0.38 -6.85 11.65 -35.23 -0.41 -7.26 16 11 C 0.05 0.86 7.17 37.94 0.27 1.13 16 12 C 0.02 0.52 5.51 -104.31 -0.57 -0.06 16 13 C -0.52 -13.30 9.00 -37.79 -0.34 -13.64 16 14 H 0.08 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.04 1.01 4.32 -17.35 -0.07 0.93 16 16 N -0.81 -20.89 11.59 55.54 0.64 -20.25 16 17 Si 1.07 21.23 30.00 -169.99 -5.10 16.13 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 21 H 0.07 1.52 7.35 -51.93 -0.38 1.14 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.07 1.71 7.12 -51.93 -0.37 1.34 16 24 H 0.08 1.43 7.73 -51.93 -0.40 1.03 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.67 7.86 -51.93 -0.41 1.27 16 30 H 0.29 7.90 6.49 -40.82 -0.26 7.63 16 LS Contribution 255.55 15.07 3.85 3.85 Total: -1.00 -28.46 255.55 -5.29 -33.75 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.54 Total: 3.09 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.35 Total: -22.09 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 1.06 Total: -29.83 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.21 Total: -4.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.10 Total: 16.13 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.46 -5.29 -33.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.731 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds