Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29854 * 127.31272 * 2 1 4 4 O 1.20565 * 112.93509 * 180.27232 * 3 2 1 5 5 C 1.33760 * 113.30646 * 359.71816 * 4 3 2 6 6 C 1.50694 * 127.06397 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.45983 * 182.64664 * 6 5 4 8 8 C 1.54514 * 110.51499 * 60.03952 * 6 5 4 9 9 C 1.54472 * 104.06360 * 241.35619 * 8 6 5 10 10 O 1.44428 * 104.80699 * 23.97480 * 9 8 6 11 11 C 1.44424 * 105.27500 * 319.49138 * 10 9 8 12 12 C 1.39660 * 105.87256 * 359.97438 * 5 4 3 13 13 C 1.41474 * 128.74392 * 179.97438 * 12 5 4 14 14 H 1.07997 * 119.99903 * 329.97724 * 13 12 5 15 15 C 1.39727 * 119.99937 * 149.97213 * 13 12 5 16 16 N 1.31005 * 120.00615 * 334.73087 * 15 13 12 17 17 Si 1.86804 * 119.99608 * 154.72451 * 15 13 12 18 18 H 1.48491 * 109.47432 * 270.00226 * 17 15 13 19 19 H 1.48506 * 109.46794 * 150.00519 * 17 15 13 20 20 H 1.48500 * 109.47254 * 30.00872 * 17 15 13 21 21 H 1.08996 * 109.46952 * 273.40868 * 1 2 3 22 22 H 1.08993 * 109.47505 * 33.41658 * 1 2 3 23 23 H 1.09006 * 109.46930 * 153.41112 * 1 2 3 24 24 H 1.08998 * 110.50576 * 0.02562 * 8 6 5 25 25 H 1.08996 * 110.51178 * 122.57233 * 8 6 5 26 26 H 1.09001 * 110.37583 * 142.80686 * 9 8 6 27 27 H 1.09007 * 110.37499 * 265.14640 * 9 8 6 28 28 H 1.08999 * 110.36838 * 281.67557 * 11 10 9 29 29 H 1.09000 * 110.37444 * 159.34027 * 11 10 9 30 30 H 0.97003 * 119.99290 * 354.12467 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2941 1.0328 0.0000 4 8 3.4620 0.7334 -0.0053 5 6 3.6696 -0.5880 -0.0038 6 6 4.9985 -1.2986 -0.0097 7 1 4.8532 -2.3780 -0.0539 8 6 5.8236 -0.9142 1.2389 9 6 7.0905 -0.2459 0.6604 10 8 6.6940 0.2294 -0.6445 11 6 5.8646 -0.8171 -1.1948 12 6 2.4019 -1.1738 0.0042 13 6 2.0610 -2.5469 0.0083 14 1 2.7142 -3.2668 -0.4623 15 6 0.8793 -2.9716 0.6211 16 7 0.3473 -2.2587 1.5829 17 14 0.0580 -4.5558 0.0688 18 1 -0.9062 -4.2597 -1.0209 19 1 -0.6628 -5.1654 1.2153 20 1 1.0899 -5.5018 -0.4266 21 1 -0.3633 0.0611 1.0258 22 1 -0.3634 0.8577 -0.5659 23 1 -0.3633 -0.9190 -0.4600 24 1 5.2701 -0.2105 1.8605 25 1 6.0861 -1.8034 1.8119 26 1 7.4007 0.5882 1.2899 27 1 7.8963 -0.9744 0.5701 28 1 6.4824 -1.6331 -1.5696 29 1 5.2330 -0.4219 -1.9904 30 1 0.8164 -1.4829 1.9279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260714355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -30.351421 kcal Electronic energy + Delta-G solvation = -15588.792254 eV Core-core repulsion = 12964.696774 eV Total energy + Delta-G solvation = -2624.095481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.87769 -40.14988 -36.74976 -34.35787 -33.72830 -31.37354 -29.81586 -29.34199 -27.18272 -24.01635 -23.13760 -22.70304 -20.15042 -19.53750 -18.01512 -17.62162 -17.15632 -16.72255 -16.04668 -15.73145 -15.27358 -14.60993 -14.34460 -13.91731 -13.81482 -13.68662 -13.38204 -12.71983 -12.66169 -12.44969 -12.23778 -11.95699 -11.74618 -11.71272 -11.32323 -10.89997 -10.77986 -10.26588 -9.72659 -9.11158 -6.43537 0.98144 1.43404 1.56001 1.81746 1.90061 2.37976 2.80370 3.02936 3.11818 3.74249 3.79813 3.85969 4.05165 4.18258 4.27195 4.36657 4.66872 4.74165 4.75481 4.78189 4.84476 4.84928 5.05677 5.15361 5.17870 5.39275 5.46012 5.84107 5.90923 5.94842 6.53203 6.92940 7.97529 8.13726 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.009751 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.482983 B = 2870.748143 C = 3391.819596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.070 4.070 3 N -0.402 5.402 4 O 0.077 5.923 5 C -0.224 4.224 6 C -0.001 4.001 7 H 0.104 0.896 8 C -0.145 4.145 9 C 0.048 3.952 10 O -0.398 6.398 11 C 0.057 3.943 12 C -0.020 4.020 13 C -0.538 4.538 14 H 0.079 0.921 15 C 0.008 3.992 16 N -0.822 5.822 17 Si 1.117 2.883 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -3.290 -1.654 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.229 4.229 3 N -0.107 5.107 4 O 0.007 5.993 5 C -0.285 4.285 6 C -0.021 4.021 7 H 0.122 0.878 8 C -0.183 4.183 9 C -0.028 4.028 10 O -0.317 6.317 11 C -0.020 4.020 12 C -0.025 4.025 13 C -0.568 4.568 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.446 5.446 17 Si 0.935 3.065 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.382 -2.702 -1.473 6.200 hybrid contribution 0.925 0.415 0.049 1.015 sum 6.307 -2.287 -1.423 6.858 Atomic orbital electron populations 1.19852 0.86064 1.01825 1.01810 1.25151 0.98649 0.89986 1.09076 1.72986 0.90747 1.25973 1.21020 1.84080 1.19522 1.25334 1.70411 1.24276 0.97304 0.81893 1.25061 1.20558 0.87121 0.98350 0.96050 0.87840 1.23018 0.96232 1.01735 0.97285 1.23575 0.95798 0.99757 0.83669 1.89076 1.68442 1.42257 1.31957 1.23527 0.91955 0.91000 0.95532 1.20177 0.89555 0.94528 0.98231 1.19666 1.09566 0.90505 1.37041 0.90329 1.28131 0.94582 1.06150 0.91774 1.70651 1.40186 1.15144 1.18659 0.82980 0.76128 0.70622 0.76766 1.19141 1.20104 1.18451 0.91733 0.91426 0.91436 0.93073 0.88286 0.88286 0.89365 0.88970 0.90974 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.75 8.60 71.24 0.61 -1.14 16 2 C -0.07 -3.67 6.77 45.33 0.31 -3.37 16 3 N -0.40 -21.29 11.96 -43.72 -0.52 -21.82 16 4 O 0.08 3.96 11.06 74.68 0.83 4.78 16 5 C -0.22 -10.84 5.91 26.03 0.15 -10.69 16 6 C 0.00 -0.04 3.57 -10.52 -0.04 -0.08 16 7 H 0.10 3.81 7.70 -2.38 -0.02 3.79 16 8 C -0.14 -4.60 6.73 31.61 0.21 -4.39 16 9 C 0.05 1.29 7.63 72.48 0.55 1.84 16 10 O -0.40 -13.64 11.65 -148.98 -1.74 -15.37 16 11 C 0.06 1.87 7.17 72.49 0.52 2.39 16 12 C -0.02 -1.06 5.51 -19.66 -0.11 -1.16 16 13 C -0.54 -27.79 9.00 23.43 0.21 -27.58 16 14 H 0.08 3.91 7.81 -2.91 -0.02 3.89 16 15 C 0.01 0.40 4.32 85.18 0.37 0.76 16 16 N -0.82 -42.94 11.59 21.79 0.25 -42.69 16 17 Si 1.12 41.73 30.00 68.60 2.06 43.79 16 18 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 19 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 21 H 0.06 2.99 7.35 -2.39 -0.02 2.97 16 22 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.07 3.17 7.12 -2.38 -0.02 3.15 16 24 H 0.05 1.87 7.73 -2.39 -0.02 1.86 16 25 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 2.62 7.86 -2.39 -0.02 2.60 16 30 H 0.27 15.18 6.49 -92.71 -0.60 14.58 16 Total: -1.00 -61.45 255.55 4.98 -56.47 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.31 Total: 18.24 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.79 Total: -43.40 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.27 Total: -64.51 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.91 Total: -10.59 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.06 Total: 43.79 kcal Total: -61.45 4.98 -56.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.122 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds