Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29848 * 127.31045 * 2 1 4 4 O 1.20569 * 112.93101 * 180.27017 * 3 2 1 5 5 C 1.33764 * 113.30744 * 359.71960 * 4 3 2 6 6 C 1.50698 * 127.06235 * 179.97438 * 5 4 3 7 7 H 1.09006 * 110.74649 * 182.06102 * 6 5 4 8 8 C 1.55299 * 110.85022 * 305.75429 * 6 5 4 9 9 C 1.54951 * 100.94052 * 152.32737 * 8 6 5 10 10 O 1.43648 * 105.13639 * 323.55443 * 9 8 6 11 11 C 1.43243 * 109.96843 * 24.42717 * 10 9 8 12 12 C 1.39661 * 105.87143 * 359.97438 * 5 4 3 13 13 C 1.41471 * 128.74161 * 179.97438 * 12 5 4 14 14 H 1.07995 * 120.00087 * 329.97502 * 13 12 5 15 15 C 1.39734 * 119.99818 * 149.98127 * 13 12 5 16 16 N 1.31011 * 119.99903 * 334.72536 * 15 13 12 17 17 Si 1.86797 * 120.00059 * 154.72460 * 15 13 12 18 18 H 1.48498 * 109.47321 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47036 * 59.99761 * 17 15 13 20 20 H 1.48500 * 109.47290 * 299.99872 * 17 15 13 21 21 H 1.08996 * 109.46703 * 273.41003 * 1 2 3 22 22 H 1.08996 * 109.47286 * 33.41109 * 1 2 3 23 23 H 1.09005 * 109.46474 * 153.40884 * 1 2 3 24 24 H 1.09000 * 111.12606 * 270.24426 * 8 6 5 25 25 H 1.09000 * 111.12519 * 34.40647 * 8 6 5 26 26 H 1.08998 * 110.30683 * 204.64211 * 9 8 6 27 27 H 1.08999 * 110.39353 * 82.51622 * 9 8 6 28 28 H 1.08999 * 109.83277 * 238.77354 * 11 10 9 29 29 H 1.08998 * 109.90161 * 117.84447 * 11 10 9 30 30 H 0.96999 * 119.99636 * 354.12181 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2941 1.0328 0.0000 4 8 3.4620 0.7333 -0.0052 5 6 3.6696 -0.5881 -0.0038 6 6 4.9986 -1.2987 -0.0096 7 1 4.8585 -2.3792 -0.0434 8 6 5.8795 -0.8138 -1.1931 9 6 7.2992 -1.0556 -0.6213 10 8 7.1991 -0.7411 0.7768 11 6 5.8442 -0.8923 1.2164 12 6 2.4019 -1.1739 0.0042 13 6 2.0610 -2.5469 0.0082 14 1 2.7142 -3.2668 -0.4623 15 6 0.8791 -2.9716 0.6210 16 7 0.3471 -2.2586 1.5827 17 14 0.0578 -4.5558 0.0687 18 1 -1.1715 -4.7817 0.8706 19 1 0.9926 -5.6927 0.2656 20 1 -0.3004 -4.4527 -1.3688 21 1 -0.3632 0.0611 1.0258 22 1 -0.3633 0.8578 -0.5658 23 1 -0.3632 -0.9190 -0.4600 24 1 5.7069 -1.4172 -2.0843 25 1 5.7136 0.2437 -1.3988 26 1 8.0196 -0.3972 -1.1066 27 1 7.5901 -2.0975 -0.7548 28 1 5.4791 0.0517 1.6210 29 1 5.7862 -1.6686 1.9794 30 1 0.8162 -1.4829 1.9278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260714360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -14.902476 kcal Electronic energy + Delta-G solvation = -15505.360777 eV Core-core repulsion = 12881.935213 eV Total energy + Delta-G solvation = -2623.425564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94748 -38.81965 -34.88550 -32.83388 -31.90317 -29.83589 -28.35073 -27.51287 -25.29916 -22.22269 -21.61382 -21.21916 -18.36977 -17.74157 -16.30653 -16.01809 -15.89360 -14.90965 -14.30067 -14.12184 -13.60389 -13.00732 -12.71613 -12.47194 -12.15695 -11.92768 -11.79272 -11.18979 -11.11216 -11.04457 -10.71185 -10.50679 -10.41213 -10.03817 -9.45642 -9.17529 -9.08280 -8.35596 -7.85145 -7.20909 -4.51304 2.81443 3.12019 3.15672 3.33472 3.68263 4.00488 4.21879 4.65481 4.87144 5.13653 5.27801 5.41717 5.53510 5.63001 5.70640 5.90664 5.96526 6.15454 6.24529 6.37876 6.47595 6.61639 6.62986 6.72947 6.84911 7.23868 7.30395 7.36455 7.80551 7.89477 8.44738 8.78751 9.89267 10.07004 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029851 B = 0.009792 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.777448 B = 2858.683321 C = 3458.206521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.052 4.052 3 N -0.381 5.381 4 O 0.078 5.922 5 C -0.243 4.243 6 C 0.013 3.987 7 H 0.099 0.901 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.391 6.391 11 C 0.056 3.944 12 C 0.024 3.976 13 C -0.515 4.515 14 H 0.077 0.923 15 C 0.041 3.959 16 N -0.804 5.804 17 Si 1.064 2.936 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -1.591 -3.184 6.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.211 4.211 3 N -0.085 5.085 4 O 0.006 5.994 5 C -0.303 4.303 6 C -0.006 4.006 7 H 0.117 0.883 8 C -0.191 4.191 9 C -0.025 4.025 10 O -0.311 6.311 11 C -0.021 4.021 12 C 0.019 3.981 13 C -0.544 4.544 14 H 0.095 0.905 15 C -0.179 4.179 16 N -0.428 5.428 17 Si 0.888 3.112 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.451 -1.166 -2.763 4.572 hybrid contribution 1.054 0.098 -0.383 1.126 sum 4.506 -1.067 -3.146 5.598 Atomic orbital electron populations 1.19916 0.87496 1.01355 1.01794 1.24680 0.97405 0.89866 1.09195 1.72995 0.90371 1.25543 1.19546 1.84059 1.19802 1.24516 1.71029 1.23167 0.95508 0.82399 1.29268 1.20412 0.88286 0.98842 0.93101 0.88269 1.23375 0.93925 1.02805 0.98948 1.23330 0.97341 0.99773 0.82068 1.88337 1.27977 1.90346 1.24440 1.23289 0.80614 1.01340 0.96860 1.19731 0.88518 0.93779 0.96104 1.19492 1.08365 0.90620 1.35957 0.90460 1.26806 0.94372 1.03976 0.92759 1.70553 1.40055 1.14964 1.17211 0.83641 0.76800 0.73751 0.77018 1.19893 1.20237 1.20174 0.91423 0.93408 0.90785 0.90212 0.90277 0.90320 0.92539 0.91086 0.91514 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.08 8.60 36.01 0.31 -0.77 16 2 C -0.05 -1.31 6.77 -79.61 -0.54 -1.85 16 3 N -0.38 -9.67 11.96 34.99 0.42 -9.25 16 4 O 0.08 1.91 10.97 17.99 0.20 2.11 16 5 C -0.24 -5.75 6.12 -33.78 -0.21 -5.96 16 6 C 0.01 0.26 3.45 -89.83 -0.31 -0.05 16 7 H 0.10 1.94 7.73 -51.93 -0.40 1.54 16 8 C -0.15 -2.50 6.60 -24.48 -0.16 -2.66 16 9 C 0.05 0.75 7.78 38.19 0.30 1.05 16 10 O -0.39 -6.92 11.36 -35.23 -0.40 -7.32 16 11 C 0.06 1.02 7.39 37.88 0.28 1.30 16 12 C 0.02 0.62 5.51 -104.31 -0.57 0.04 16 13 C -0.51 -13.15 9.01 -37.79 -0.34 -13.49 16 14 H 0.08 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.04 1.00 4.32 -17.34 -0.07 0.93 16 16 N -0.80 -20.58 11.59 55.54 0.64 -19.93 16 17 Si 1.06 20.96 30.00 -169.99 -5.10 15.86 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 21 H 0.07 1.51 7.35 -51.93 -0.38 1.13 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 1.69 7.12 -51.93 -0.37 1.32 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.29 7.81 6.49 -40.82 -0.26 7.54 16 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -27.64 255.72 -5.26 -32.90 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.56 Total: 3.24 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.32 Total: -21.46 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 1.06 Total: -29.18 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.10 Total: 15.86 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.64 -5.26 -32.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.998 kcal (2) G-P(sol) polarization free energy of solvation -27.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds