Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29848 * 127.31045 * 2 1 4 4 O 1.20569 * 112.93101 * 180.27017 * 3 2 1 5 5 C 1.33764 * 113.30744 * 359.71960 * 4 3 2 6 6 C 1.50698 * 127.06235 * 179.97438 * 5 4 3 7 7 H 1.09006 * 110.74649 * 182.06102 * 6 5 4 8 8 C 1.55299 * 110.85022 * 305.75429 * 6 5 4 9 9 C 1.54951 * 100.94052 * 152.32737 * 8 6 5 10 10 O 1.43648 * 105.13639 * 323.55443 * 9 8 6 11 11 C 1.43243 * 109.96843 * 24.42717 * 10 9 8 12 12 C 1.39661 * 105.87143 * 359.97438 * 5 4 3 13 13 C 1.41471 * 128.74161 * 179.97438 * 12 5 4 14 14 H 1.07995 * 120.00087 * 329.97502 * 13 12 5 15 15 C 1.39734 * 119.99818 * 149.98127 * 13 12 5 16 16 N 1.31011 * 119.99903 * 334.72536 * 15 13 12 17 17 Si 1.86797 * 120.00059 * 154.72460 * 15 13 12 18 18 H 1.48498 * 109.47321 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47036 * 59.99761 * 17 15 13 20 20 H 1.48500 * 109.47290 * 299.99872 * 17 15 13 21 21 H 1.08996 * 109.46703 * 273.41003 * 1 2 3 22 22 H 1.08996 * 109.47286 * 33.41109 * 1 2 3 23 23 H 1.09005 * 109.46474 * 153.40884 * 1 2 3 24 24 H 1.09000 * 111.12606 * 270.24426 * 8 6 5 25 25 H 1.09000 * 111.12519 * 34.40647 * 8 6 5 26 26 H 1.08998 * 110.30683 * 204.64211 * 9 8 6 27 27 H 1.08999 * 110.39353 * 82.51622 * 9 8 6 28 28 H 1.08999 * 109.83277 * 238.77354 * 11 10 9 29 29 H 1.08998 * 109.90161 * 117.84447 * 11 10 9 30 30 H 0.96999 * 119.99636 * 354.12181 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2941 1.0328 0.0000 4 8 3.4620 0.7333 -0.0052 5 6 3.6696 -0.5881 -0.0038 6 6 4.9986 -1.2987 -0.0096 7 1 4.8585 -2.3792 -0.0434 8 6 5.8795 -0.8138 -1.1931 9 6 7.2992 -1.0556 -0.6213 10 8 7.1991 -0.7411 0.7768 11 6 5.8442 -0.8923 1.2164 12 6 2.4019 -1.1739 0.0042 13 6 2.0610 -2.5469 0.0082 14 1 2.7142 -3.2668 -0.4623 15 6 0.8791 -2.9716 0.6210 16 7 0.3471 -2.2586 1.5827 17 14 0.0578 -4.5558 0.0687 18 1 -1.1715 -4.7817 0.8706 19 1 0.9926 -5.6927 0.2656 20 1 -0.3004 -4.4527 -1.3688 21 1 -0.3632 0.0611 1.0258 22 1 -0.3633 0.8578 -0.5658 23 1 -0.3632 -0.9190 -0.4600 24 1 5.7069 -1.4172 -2.0843 25 1 5.7136 0.2437 -1.3988 26 1 8.0196 -0.3972 -1.1066 27 1 7.5901 -2.0975 -0.7548 28 1 5.4791 0.0517 1.6210 29 1 5.7862 -1.6686 1.9794 30 1 0.8162 -1.4829 1.9278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260714360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -31.193890 kcal Electronic energy + Delta-G solvation = -15506.067226 eV Core-core repulsion = 12881.935213 eV Total energy + Delta-G solvation = -2624.132013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.90903 -40.21334 -36.77530 -34.49055 -33.76164 -31.40719 -29.93822 -29.36209 -27.19640 -23.70170 -23.21243 -22.95648 -20.19484 -19.58737 -18.03380 -17.78121 -17.44044 -16.58103 -15.82423 -15.68744 -15.16917 -14.67254 -14.38033 -14.11067 -13.96313 -13.70435 -13.54496 -12.70027 -12.64667 -12.54978 -12.24778 -12.05455 -11.92061 -11.69085 -11.35307 -10.91488 -10.53018 -10.28441 -9.76808 -9.13418 -6.46219 0.93609 1.42414 1.56140 1.82370 1.88259 2.37325 2.68860 3.01411 3.02870 3.70225 3.72388 3.74922 4.04789 4.13085 4.22572 4.33726 4.67385 4.70656 4.76504 4.80444 4.84173 4.89838 5.00379 5.06380 5.19199 5.39141 5.43686 5.82103 5.92115 5.99700 6.50369 6.89871 7.93386 8.11691 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029851 B = 0.009792 C = 0.008095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.777448 B = 2858.683321 C = 3458.206521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.067 4.067 3 N -0.396 5.396 4 O 0.075 5.925 5 C -0.229 4.229 6 C 0.005 3.995 7 H 0.099 0.901 8 C -0.145 4.145 9 C 0.052 3.948 10 O -0.402 6.402 11 C 0.064 3.936 12 C -0.015 4.015 13 C -0.537 4.537 14 H 0.079 0.921 15 C 0.009 3.991 16 N -0.819 5.819 17 Si 1.114 2.886 18 H -0.274 1.274 19 H -0.260 1.260 20 H -0.265 1.265 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -2.629 -4.081 7.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.226 4.226 3 N -0.101 5.101 4 O 0.004 5.996 5 C -0.291 4.291 6 C -0.014 4.014 7 H 0.117 0.883 8 C -0.183 4.183 9 C -0.023 4.023 10 O -0.321 6.321 11 C -0.013 4.013 12 C -0.020 4.020 13 C -0.567 4.567 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.443 5.443 17 Si 0.932 3.068 18 H -0.199 1.199 19 H -0.184 1.184 20 H -0.190 1.190 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.323 -2.184 -3.664 6.073 hybrid contribution 0.905 0.497 -0.120 1.039 sum 5.228 -1.686 -3.784 6.671 Atomic orbital electron populations 1.19872 0.85983 1.01937 1.01891 1.25146 0.98679 0.89868 1.08924 1.72975 0.90615 1.25806 1.20749 1.84033 1.19720 1.25097 1.70728 1.23937 0.96893 0.81961 1.26261 1.20600 0.86976 0.98376 0.95494 0.88251 1.23336 0.94342 1.02320 0.98328 1.23564 0.96546 1.01940 0.80281 1.88327 1.26899 1.90625 1.26298 1.23092 0.81037 1.00654 0.96480 1.20152 0.89577 0.94507 0.97749 1.19674 1.09512 0.90599 1.36932 0.90329 1.28141 0.94530 1.06151 0.91779 1.70682 1.40101 1.15025 1.18453 0.83022 0.76156 0.70613 0.77053 1.19894 1.18431 1.18988 0.91685 0.91277 0.91383 0.88493 0.91308 0.87629 0.90250 0.92730 0.90818 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.77 8.60 71.24 0.61 -1.16 16 2 C -0.07 -3.44 6.77 45.33 0.31 -3.13 16 3 N -0.40 -20.28 11.96 -43.73 -0.52 -20.81 16 4 O 0.07 3.69 10.97 74.64 0.82 4.51 16 5 C -0.23 -10.86 6.12 26.03 0.16 -10.70 16 6 C 0.01 0.20 3.45 -10.28 -0.04 0.16 16 7 H 0.10 3.78 7.73 -2.38 -0.02 3.76 16 8 C -0.15 -4.44 6.60 32.05 0.21 -4.23 16 9 C 0.05 1.35 7.78 72.65 0.57 1.92 16 10 O -0.40 -13.29 11.36 -148.98 -1.69 -14.98 16 11 C 0.06 2.31 7.39 72.45 0.54 2.84 16 12 C -0.01 -0.77 5.51 -19.67 -0.11 -0.88 16 13 C -0.54 -27.50 9.01 23.43 0.21 -27.29 16 14 H 0.08 3.88 7.82 -2.91 -0.02 3.85 16 15 C 0.01 0.43 4.32 85.18 0.37 0.80 16 16 N -0.82 -42.27 11.59 21.80 0.25 -42.01 16 17 Si 1.11 41.22 30.00 68.60 2.06 43.28 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 19 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 H 0.06 2.94 7.35 -2.39 -0.02 2.93 16 22 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.07 3.11 7.12 -2.38 -0.02 3.10 16 24 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.07 2.25 7.99 -2.39 -0.02 2.23 16 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 2.12 7.78 -2.39 -0.02 2.10 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.27 15.02 6.49 -92.71 -0.60 14.42 16 Total: -1.00 -58.70 255.72 5.05 -53.65 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.31 Total: 18.03 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 2.83 Total: -41.67 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.27 Total: -62.82 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.87 Total: -10.48 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.06 Total: 43.28 kcal Total: -58.70 5.05 -53.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.459 kcal (2) G-P(sol) polarization free energy of solvation -58.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds