Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99773 * 2 1 4 4 H 1.48504 * 109.46711 * 240.00109 * 3 2 1 5 5 H 1.48500 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47364 * 120.00126 * 3 2 1 7 7 C 1.37874 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99695 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47172 * 60.00409 * 9 7 2 11 11 O 1.42902 * 109.47377 * 299.99790 * 9 7 2 12 12 C 1.53005 * 109.46995 * 180.02562 * 9 7 2 13 13 N 1.46492 * 109.47096 * 185.00094 * 12 9 7 14 14 C 1.39949 * 120.00217 * 179.97438 * 13 12 9 15 15 C 1.38859 * 120.02165 * 179.97438 * 14 13 12 16 16 C 1.38109 * 119.97929 * 179.97438 * 15 14 13 17 17 C 1.38700 * 120.01911 * 0.02578 * 16 15 14 18 18 O 1.35999 * 119.97877 * 179.97438 * 17 16 15 19 19 C 1.38697 * 120.03850 * 0.22982 * 17 16 15 20 20 C 1.38114 * 120.02161 * 359.49000 * 19 17 16 21 21 H 0.97002 * 120.00052 * 0.02562 * 1 2 3 22 22 H 0.96697 * 114.00122 * 300.00549 * 11 9 7 23 23 H 1.09000 * 109.46803 * 64.99862 * 12 9 7 24 24 H 1.08999 * 109.47119 * 305.00258 * 12 9 7 25 25 H 0.96999 * 120.00117 * 359.97438 * 13 12 9 26 26 H 1.07993 * 120.00873 * 359.95810 * 15 14 13 27 27 H 1.07995 * 119.98642 * 180.02562 * 16 15 14 28 28 H 0.96700 * 114.00494 * 89.99707 * 18 17 16 29 29 H 1.08000 * 119.99231 * 179.72978 * 19 17 16 30 30 H 1.07993 * 120.01277 * 180.25573 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5574 -0.8881 11 8 0.4300 -2.5740 1.1689 12 6 2.2454 -3.6620 0.0027 13 7 1.5169 -4.9274 -0.1165 14 6 2.2174 -6.1387 -0.1383 15 6 1.5273 -7.3384 -0.2508 16 6 2.2195 -8.5333 -0.2727 17 6 3.6035 -8.5353 -0.1818 18 8 4.2843 -9.7124 -0.2030 19 6 4.2932 -7.3377 -0.0641 20 6 3.6031 -6.1415 -0.0478 21 1 -0.4850 0.8401 -0.0004 22 1 0.9224 -2.5281 1.9998 23 1 2.8116 -3.6550 0.9341 24 1 2.9295 -3.5558 -0.8391 25 1 0.5490 -4.9256 -0.1804 26 1 0.4496 -7.3371 -0.3208 27 1 1.6829 -9.4664 -0.3606 28 1 4.5390 -10.0037 -1.0892 29 1 5.3706 -7.3404 0.0110 30 1 4.1406 -5.2089 0.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260717397.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -97.431083 kcal Electronic energy + Delta-G solvation = -14507.821816 eV Core-core repulsion = 11880.817543 eV Total energy + Delta-G solvation = -2627.004273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61946 -38.67871 -37.50694 -35.06865 -34.26959 -31.90452 -30.79417 -28.53536 -26.29993 -24.03366 -22.81741 -22.11026 -19.18848 -19.14296 -18.14976 -16.93603 -16.69162 -16.25370 -16.18465 -15.91692 -15.14539 -14.86530 -14.46010 -14.23849 -14.16133 -13.30937 -13.16596 -13.01867 -12.78506 -12.70181 -12.59914 -12.08416 -11.25328 -11.10107 -10.77017 -10.71085 -10.26729 -9.89562 -8.17878 -8.17678 -6.43731 0.47818 0.60269 1.42404 1.43369 1.51588 2.34903 2.65305 2.86080 3.09881 3.53917 4.00321 4.11096 4.18582 4.31535 4.48630 4.52431 4.65238 4.82720 4.97041 5.12137 5.32278 5.42983 5.56545 5.62408 5.66885 5.85269 5.98701 6.42130 6.67716 6.87595 7.04395 7.29268 7.47334 8.87069 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.005175 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.392978 B = 5409.034751 C = 5754.025094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.588 4.588 8 H 0.065 0.935 9 C 0.223 3.777 10 H 0.030 0.970 11 O -0.578 6.578 12 C 0.118 3.882 13 N -0.739 5.739 14 C 0.199 3.801 15 C -0.193 4.193 16 C -0.096 4.096 17 C 0.025 3.975 18 O -0.508 6.508 19 C -0.098 4.098 20 C -0.200 4.200 21 H 0.262 0.738 22 H 0.358 0.642 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.400 0.600 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.400 0.600 29 H 0.139 0.861 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -13.493 -1.541 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.627 4.627 8 H 0.083 0.917 9 C 0.165 3.835 10 H 0.047 0.953 11 O -0.382 6.382 12 C -0.007 4.007 13 N -0.366 5.366 14 C 0.094 3.906 15 C -0.216 4.216 16 C -0.115 4.115 17 C -0.021 4.021 18 O -0.320 6.320 19 C -0.117 4.117 20 C -0.223 4.223 21 H 0.071 0.929 22 H 0.203 0.797 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.234 0.766 26 H 0.151 0.849 27 H 0.162 0.838 28 H 0.257 0.743 29 H 0.157 0.843 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.040 -13.222 -1.379 14.602 hybrid contribution 0.328 1.137 -0.213 1.203 sum 6.368 -12.085 -1.592 13.752 Atomic orbital electron populations 1.70196 1.07698 1.27626 1.48043 1.25882 0.95468 1.02972 0.93166 0.85581 0.78324 0.78301 0.79193 1.19259 1.21140 1.19124 1.21900 0.93774 0.92216 1.54763 0.91707 1.19399 0.88158 0.90674 0.85245 0.95255 1.86497 1.39214 1.96380 1.16097 1.21937 0.95466 0.83285 1.00001 1.44935 1.08683 1.02743 1.80268 1.18258 0.92021 0.86462 0.93817 1.20668 1.00336 0.90529 1.10021 1.21315 0.93604 0.98205 0.98344 1.18261 0.90250 0.85317 1.08310 1.84830 1.75577 1.36360 1.35195 1.21307 1.00705 0.91077 0.98567 1.20681 0.92358 0.98825 1.10418 0.92872 0.79689 0.92789 0.92656 0.76558 0.84877 0.83760 0.74325 0.84283 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.36 12.84 21.45 0.28 -52.08 16 2 C 0.03 1.52 5.40 84.65 0.46 1.98 16 3 Si 0.96 42.00 29.54 68.60 2.03 44.02 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.59 -30.97 8.76 25.60 0.22 -30.75 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.22 10.84 2.86 29.85 0.09 10.93 16 10 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 11 O -0.58 -28.60 12.68 -148.98 -1.89 -30.49 16 12 C 0.12 4.60 4.49 86.38 0.39 4.99 16 13 N -0.74 -25.79 5.69 -339.27 -1.93 -27.72 16 14 C 0.20 6.28 6.66 38.14 0.25 6.53 16 15 C -0.19 -5.27 9.89 22.39 0.22 -5.05 16 16 C -0.10 -2.33 9.98 22.35 0.22 -2.11 16 17 C 0.02 0.62 6.70 22.49 0.15 0.77 16 18 O -0.51 -10.71 13.50 -93.54 -1.26 -11.97 16 19 C -0.10 -2.54 9.98 22.35 0.22 -2.32 16 20 C -0.20 -5.97 9.31 22.39 0.21 -5.76 16 21 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 22 H 0.36 15.79 9.04 -74.06 -0.67 15.12 16 23 H 0.05 2.05 7.95 -2.39 -0.02 2.03 16 24 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 25 H 0.40 14.03 8.49 -92.71 -0.79 13.25 16 26 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.40 4.42 9.06 -74.06 -0.67 3.75 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.12 3.64 6.73 -2.91 -0.02 3.62 16 Total: -1.00 -62.99 267.18 -1.29 -64.29 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.95 Total: 34.74 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 2.44 Total: -20.79 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.65 Total: -79.80 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -3.15 Total: -42.46 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -62.99 -1.29 -64.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260717397.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.146 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds