Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86802 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47180 * 299.99857 * 3 2 1 6 6 H 1.48501 * 109.47128 * 59.99882 * 3 2 1 7 7 C 1.39729 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.41259 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.38795 * 126.67654 * 0.02704 * 9 7 2 11 11 O 1.34427 * 106.50551 * 179.73943 * 10 9 7 12 12 C 1.34057 * 108.38691 * 0.38076 * 11 10 9 13 13 C 1.50701 * 125.08085 * 179.86688 * 12 11 10 14 14 C 1.52997 * 109.47212 * 269.69690 * 13 12 11 15 15 H 1.09000 * 109.82544 * 305.57006 * 14 13 12 16 16 C 1.54379 * 109.83254 * 184.58779 * 14 13 12 17 17 C 1.55313 * 102.25252 * 219.12826 * 16 14 13 18 18 C 1.54953 * 100.93976 * 34.13279 * 17 16 14 19 19 O 1.43239 * 109.83027 * 66.44874 * 14 13 12 20 20 N 1.29917 * 109.84304 * 359.60260 * 12 11 10 21 21 H 0.96996 * 120.00641 * 0.02562 * 1 2 3 22 22 H 1.07994 * 126.74928 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47060 * 29.69745 * 13 12 11 24 24 H 1.09001 * 109.47380 * 149.69833 * 13 12 11 25 25 H 1.08993 * 110.84821 * 337.31660 * 16 14 13 26 26 H 1.08994 * 110.84800 * 100.94120 * 16 14 13 27 27 H 1.08995 * 111.12270 * 276.21442 * 17 16 14 28 28 H 1.09003 * 111.15893 * 152.06598 * 17 16 14 29 29 H 1.09000 * 110.30802 * 204.63699 * 18 17 16 30 30 H 1.08996 * 110.30484 * 82.46929 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.7039 1.3466 0.0006 5 1 1.8851 2.3965 -1.2125 6 1 1.8850 2.3965 1.2125 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3025 -2.4334 0.0005 10 6 -0.0761 -2.5948 -0.0005 11 8 -0.3055 -3.9193 -0.0059 12 6 0.8758 -4.5531 0.0003 13 6 1.0559 -6.0493 0.0000 14 6 1.1162 -6.5561 1.4424 15 1 1.8915 -6.0205 1.9902 16 6 1.4156 -8.0705 1.4534 17 6 0.5072 -8.5776 2.6066 18 6 -0.7088 -7.6282 2.4624 19 8 -0.1518 -6.3607 2.0794 20 7 1.8421 -3.6848 0.0009 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8185 -1.8105 -0.0018 23 1 0.2160 -6.5163 -0.5144 24 1 1.9832 -6.3036 -0.5134 25 1 1.1319 -8.5289 0.5061 26 1 2.4660 -8.2567 1.6766 27 1 0.9927 -8.4500 3.5741 28 1 0.2156 -9.6162 2.4501 29 1 -1.2340 -7.5389 3.4133 30 1 -1.3844 -7.9937 1.6891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260806766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -45.764357 kcal Electronic energy + Delta-G solvation = -14986.159968 eV Core-core repulsion = 12361.396132 eV Total energy + Delta-G solvation = -2624.763836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03025 -39.23216 -33.94343 -32.94694 -32.08561 -31.63786 -28.28242 -26.30885 -24.56455 -21.85639 -21.12338 -20.46502 -19.40785 -17.24512 -16.58223 -15.92913 -15.30283 -14.76142 -14.53774 -14.03656 -13.62074 -13.47658 -12.89396 -12.64271 -12.09463 -11.70992 -11.55242 -11.27298 -11.22578 -11.06289 -10.84294 -10.80536 -10.28201 -9.85290 -9.83931 -9.36824 -8.90600 -8.76628 -7.00830 -6.56598 -4.27188 3.06506 3.18052 3.25550 3.30195 3.97750 4.07831 4.24875 4.43726 4.53985 4.83541 4.97796 5.26628 5.27622 5.49696 5.56032 5.61002 5.68031 5.73545 5.82546 5.87084 6.02895 6.13928 6.38228 7.15302 7.27298 7.48375 7.49228 7.83415 8.04783 8.55543 8.89110 9.05528 9.73652 10.48173 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.063411 B = 0.006017 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.459955 B = 4652.328503 C = 4775.738062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.058 3.942 3 Si 0.929 3.071 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.417 4.417 8 H 0.077 0.923 9 C 0.132 3.868 10 C -0.191 4.191 11 O -0.223 6.223 12 C 0.136 3.864 13 C -0.020 4.020 14 C 0.085 3.915 15 H 0.086 0.914 16 C -0.150 4.150 17 C -0.156 4.156 18 C 0.047 3.953 19 O -0.366 6.366 20 N -0.515 5.515 21 H 0.277 0.723 22 H 0.229 0.771 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -12.831 2.860 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.153 4.153 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.451 4.451 8 H 0.096 0.904 9 C 0.016 3.984 10 C -0.261 4.261 11 O -0.110 6.110 12 C -0.069 4.069 13 C -0.059 4.059 14 C 0.026 3.974 15 H 0.104 0.896 16 C -0.187 4.187 17 C -0.194 4.194 18 C -0.030 4.030 19 O -0.285 6.285 20 N -0.252 5.252 21 H 0.088 0.912 22 H 0.244 0.756 23 H 0.098 0.902 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.063 -12.671 2.882 12.994 hybrid contribution -0.309 0.906 -0.041 0.958 sum -0.246 -11.765 2.842 12.105 Atomic orbital electron populations 1.69311 1.07333 1.28273 1.42105 1.25657 0.94889 1.01044 0.93695 0.85909 0.80200 0.80280 0.78122 1.18765 1.20193 1.20187 1.18527 0.94211 0.87606 1.44766 0.90430 1.19375 0.90118 0.89931 0.98977 1.26635 0.99872 0.78969 1.20627 1.84112 1.34297 1.21194 1.71410 1.25027 0.80111 0.95582 1.06210 1.20146 1.03296 0.85722 0.96718 1.22815 0.86768 0.94688 0.93098 0.89565 1.23184 1.01079 0.95051 0.99405 1.23268 0.96720 1.00011 0.99404 1.23365 0.95535 0.84119 0.99936 1.88619 1.34235 1.27544 1.78120 1.70684 1.32161 1.00944 1.21415 0.91244 0.75595 0.90170 0.88208 0.90230 0.89822 0.90471 0.90162 0.90084 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.04 10.34 55.54 0.57 -22.47 16 2 C 0.06 1.57 5.49 -17.35 -0.10 1.48 16 3 Si 0.93 20.38 29.56 -169.99 -5.02 15.35 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.42 -12.31 9.49 -37.88 -0.36 -12.67 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.13 3.99 6.89 -84.54 -0.58 3.40 16 10 C -0.19 -5.60 11.18 30.94 0.35 -5.25 16 11 O -0.22 -6.10 10.72 6.03 0.06 -6.04 16 12 C 0.14 3.39 7.33 -13.09 -0.10 3.30 16 13 C -0.02 -0.36 5.42 -27.88 -0.15 -0.51 16 14 C 0.08 1.35 3.51 -26.01 -0.09 1.26 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.15 -1.63 6.54 -24.78 -0.16 -1.79 16 17 C -0.16 -1.54 7.16 -24.47 -0.18 -1.72 16 18 C 0.05 0.59 7.78 38.19 0.30 0.89 16 19 O -0.37 -6.57 10.82 -35.23 -0.38 -6.95 16 20 N -0.52 -14.44 11.36 -8.64 -0.10 -14.54 16 21 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 22 H 0.23 6.63 5.78 -52.49 -0.30 6.33 16 23 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 259.80 15.07 3.92 3.92 Total: -1.00 -33.29 259.80 -5.66 -38.95 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.64 Total: 3.39 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.07 Total: -11.62 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.48 Total: -37.01 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.32 Total: -12.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.29 -5.66 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.813 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds