Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86802 * 119.99555 * 2 1 4 4 H 1.48501 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47180 * 299.99857 * 3 2 1 6 6 H 1.48501 * 109.47128 * 59.99882 * 3 2 1 7 7 C 1.39729 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.41259 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.38795 * 126.67654 * 0.02704 * 9 7 2 11 11 O 1.34427 * 106.50551 * 179.73943 * 10 9 7 12 12 C 1.34057 * 108.38691 * 0.38076 * 11 10 9 13 13 C 1.50701 * 125.08085 * 179.86688 * 12 11 10 14 14 C 1.52997 * 109.47212 * 269.69690 * 13 12 11 15 15 H 1.09000 * 109.82544 * 305.57006 * 14 13 12 16 16 C 1.54379 * 109.83254 * 184.58779 * 14 13 12 17 17 C 1.55313 * 102.25252 * 219.12826 * 16 14 13 18 18 C 1.54953 * 100.93976 * 34.13279 * 17 16 14 19 19 O 1.43239 * 109.83027 * 66.44874 * 14 13 12 20 20 N 1.29917 * 109.84304 * 359.60260 * 12 11 10 21 21 H 0.96996 * 120.00641 * 0.02562 * 1 2 3 22 22 H 1.07994 * 126.74928 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47060 * 29.69745 * 13 12 11 24 24 H 1.09001 * 109.47380 * 149.69833 * 13 12 11 25 25 H 1.08993 * 110.84821 * 337.31660 * 16 14 13 26 26 H 1.08994 * 110.84800 * 100.94120 * 16 14 13 27 27 H 1.08995 * 111.12270 * 276.21442 * 17 16 14 28 28 H 1.09003 * 111.15893 * 152.06598 * 17 16 14 29 29 H 1.09000 * 110.30802 * 204.63699 * 18 17 16 30 30 H 1.08996 * 110.30484 * 82.46929 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.7039 1.3466 0.0006 5 1 1.8851 2.3965 -1.2125 6 1 1.8850 2.3965 1.2125 7 6 2.0087 -1.2100 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3025 -2.4334 0.0005 10 6 -0.0761 -2.5948 -0.0005 11 8 -0.3055 -3.9193 -0.0059 12 6 0.8758 -4.5531 0.0003 13 6 1.0559 -6.0493 0.0000 14 6 1.1162 -6.5561 1.4424 15 1 1.8915 -6.0205 1.9902 16 6 1.4156 -8.0705 1.4534 17 6 0.5072 -8.5776 2.6066 18 6 -0.7088 -7.6282 2.4624 19 8 -0.1518 -6.3607 2.0794 20 7 1.8421 -3.6848 0.0009 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8185 -1.8105 -0.0018 23 1 0.2160 -6.5163 -0.5144 24 1 1.9832 -6.3036 -0.5134 25 1 1.1319 -8.5289 0.5061 26 1 2.4660 -8.2567 1.6766 27 1 0.9927 -8.4500 3.5741 28 1 0.2156 -9.6162 2.4501 29 1 -1.2340 -7.5389 3.4133 30 1 -1.3844 -7.9937 1.6891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260806766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = -71.188995 kcal Electronic energy + Delta-G solvation = -14987.262463 eV Core-core repulsion = 12361.396132 eV Total energy + Delta-G solvation = -2625.866331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.12267 -40.36851 -36.08968 -34.81294 -33.59481 -32.84705 -30.10005 -28.01496 -26.39243 -22.94491 -22.62414 -22.27141 -21.27992 -19.21971 -17.78706 -17.43818 -17.17392 -16.52137 -16.36999 -15.48439 -15.28335 -14.76679 -14.39498 -14.03078 -13.95138 -13.11368 -13.04406 -12.90978 -12.59796 -12.32817 -12.16396 -12.01041 -11.89264 -11.83732 -11.66607 -11.01424 -10.95215 -10.52855 -9.17572 -8.64533 -6.50797 1.15938 1.38467 1.40637 1.56656 2.17708 2.22068 2.58440 2.93143 3.33361 3.59798 3.72982 3.85163 4.00127 4.21084 4.28399 4.46151 4.64710 4.76278 4.85133 4.93412 4.96798 5.01693 5.09624 5.30900 5.36110 5.44876 5.64921 5.87432 6.17686 6.33080 6.72919 6.86102 7.57247 8.41661 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.063411 B = 0.006017 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.459955 B = 4652.328503 C = 4775.738062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.017 3.983 3 Si 1.012 2.988 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.072 0.928 9 C 0.105 3.895 10 C -0.233 4.233 11 O -0.234 6.234 12 C 0.159 3.841 13 C -0.022 4.022 14 C 0.082 3.918 15 H 0.060 0.940 16 C -0.137 4.137 17 C -0.145 4.145 18 C 0.034 3.966 19 O -0.412 6.412 20 N -0.548 5.548 21 H 0.290 0.710 22 H 0.220 0.780 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -13.901 2.885 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.192 4.192 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.090 0.910 9 C -0.009 4.009 10 C -0.302 4.302 11 O -0.122 6.122 12 C -0.048 4.048 13 C -0.060 4.060 14 C 0.023 3.977 15 H 0.078 0.922 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.042 4.042 19 O -0.332 6.332 20 N -0.284 5.284 21 H 0.101 0.899 22 H 0.236 0.764 23 H 0.122 0.878 24 H 0.144 0.856 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.643 -13.752 2.910 14.072 hybrid contribution -0.549 1.156 -0.025 1.280 sum 0.093 -12.597 2.885 12.923 Atomic orbital electron populations 1.69372 1.08836 1.30183 1.40318 1.26787 0.95899 1.04643 0.91908 0.84711 0.78481 0.74588 0.79062 1.18505 1.18518 1.18695 1.18849 0.94245 0.88843 1.47316 0.90986 1.19847 0.90894 0.91148 0.99059 1.26392 0.99566 0.79798 1.24438 1.84092 1.35365 1.20609 1.72145 1.26565 0.78793 0.98152 1.01272 1.20632 1.05547 0.80793 0.99032 1.22806 0.85797 0.98140 0.90939 0.92213 1.23171 1.02534 0.90677 1.01056 1.23261 0.94890 1.00946 0.99130 1.23671 0.96882 0.83026 1.00601 1.88578 1.35079 1.31063 1.78492 1.70698 1.33207 1.00826 1.23699 0.89924 0.76389 0.87836 0.85602 0.88054 0.87960 0.90272 0.86893 0.89476 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.82 10.34 21.79 0.23 -47.59 16 2 C 0.02 0.92 5.49 85.18 0.47 1.39 16 3 Si 1.01 41.46 29.56 68.60 2.03 43.49 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.46 -28.05 9.49 23.37 0.22 -27.83 16 8 H 0.07 4.31 7.84 -2.91 -0.02 4.29 16 9 C 0.11 6.63 6.89 39.33 0.27 6.90 16 10 C -0.23 -14.32 11.18 67.95 0.76 -13.56 16 11 O -0.23 -13.25 10.72 -1.33 -0.01 -13.26 16 12 C 0.16 8.07 7.33 88.39 0.65 8.72 16 13 C -0.02 -0.75 5.42 29.85 0.16 -0.59 16 14 C 0.08 2.52 3.51 31.06 0.11 2.63 16 15 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 16 C -0.14 -2.51 6.54 31.86 0.21 -2.30 16 17 C -0.14 -2.35 7.16 32.06 0.23 -2.12 16 18 C 0.03 0.79 7.78 72.65 0.57 1.35 16 19 O -0.41 -14.66 10.82 -148.98 -1.61 -16.28 16 20 N -0.55 -31.70 11.36 -296.17 -3.36 -35.07 16 21 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 22 H 0.22 13.50 5.78 -2.91 -0.02 13.49 16 23 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 24 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 25 H 0.10 1.46 7.85 -2.39 -0.02 1.44 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -75.98 259.80 2.04 -73.94 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.14 Total: 20.18 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 3.64 Total: -25.42 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.14 Total: -82.66 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.63 Total: -29.54 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -75.98 2.04 -73.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.748 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds