Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86798 * 120.00396 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00719 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00469 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00180 * 3 2 1 7 7 C 1.39735 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.41260 * 120.00195 * 359.72143 * 7 2 1 10 10 C 1.38792 * 126.67285 * 359.69023 * 9 7 2 11 11 O 1.34429 * 106.50122 * 179.84495 * 10 9 7 12 12 C 1.34052 * 108.38885 * 0.41906 * 11 10 9 13 13 C 1.50701 * 125.08094 * 179.73057 * 12 11 10 14 14 C 1.53004 * 109.46880 * 270.00257 * 13 12 11 15 15 H 1.08995 * 110.80448 * 308.62057 * 14 13 12 16 16 C 1.54813 * 110.90277 * 184.99733 * 14 13 12 17 17 C 1.54100 * 104.18690 * 220.92121 * 16 14 13 18 18 O 1.43741 * 107.29424 * 357.97151 * 17 16 14 19 19 C 1.44385 * 106.97445 * 26.51334 * 18 17 16 20 20 N 1.29910 * 109.84002 * 359.73068 * 12 11 10 21 21 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 22 22 H 1.07996 * 126.75305 * 0.02562 * 10 9 7 23 23 H 1.08998 * 109.46914 * 29.99994 * 13 12 11 24 24 H 1.09002 * 109.47501 * 150.00277 * 13 12 11 25 25 H 1.08999 * 110.48887 * 339.60190 * 16 14 13 26 26 H 1.09010 * 110.48561 * 102.24767 * 16 14 13 27 27 H 1.08999 * 109.88275 * 117.39908 * 17 16 14 28 28 H 1.09010 * 109.87776 * 238.39954 * 17 16 14 29 29 H 1.08997 * 110.61710 * 201.44004 * 19 18 17 30 30 H 1.09000 * 110.61842 * 78.44008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4914 2.0464 -1.4000 5 1 1.4414 2.6526 0.7002 6 1 3.5416 1.4400 0.7000 7 6 2.0085 -1.2102 -0.0005 8 1 3.0886 -1.2102 -0.0010 9 6 1.3022 -2.4335 0.0049 10 6 -0.0763 -2.5947 0.0170 11 8 -0.3058 -3.9193 0.0146 12 6 0.8754 -4.5532 0.0109 13 6 1.0554 -6.0494 0.0131 14 6 1.1223 -6.5528 1.4564 15 1 1.8589 -5.9894 2.0291 16 6 1.4318 -8.0691 1.4987 17 6 0.5156 -8.6107 2.6131 18 8 -0.1924 -7.4890 3.1669 19 6 -0.2718 -6.4871 2.1303 20 7 1.8417 -3.6849 0.0051 21 1 -0.4850 0.8400 0.0004 22 1 -0.8186 -1.8104 0.0238 23 1 0.2130 -6.5174 -0.4963 24 1 1.9803 -6.3049 -0.5041 25 1 1.1878 -8.5351 0.5440 26 1 2.4791 -8.2379 1.7500 27 1 -0.1925 -9.3265 2.1956 28 1 1.1160 -9.0910 3.3858 29 1 -0.4434 -5.5011 2.5619 30 1 -1.0560 -6.7360 1.4152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260877089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = -48.524837 kcal Electronic energy + Delta-G solvation = -14948.405888 eV Core-core repulsion = 12323.522349 eV Total energy + Delta-G solvation = -2624.883539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19117 -39.23323 -34.10932 -33.91959 -32.38190 -30.17577 -28.37881 -26.42234 -24.70116 -22.53406 -20.66218 -20.57891 -19.52910 -17.35365 -16.34308 -15.72045 -15.36795 -15.03727 -14.72686 -14.42822 -13.81783 -13.33814 -13.05940 -12.73081 -12.18892 -11.78897 -11.54501 -11.36680 -11.26790 -10.99673 -10.71077 -10.50192 -10.35347 -9.97295 -9.94065 -9.58698 -9.02605 -8.87635 -7.14088 -6.65504 -4.37014 3.01320 3.13278 3.16463 3.19471 3.99971 4.02635 4.17616 4.30905 4.65034 4.87918 4.96981 5.20045 5.37664 5.45328 5.47531 5.59853 5.72556 5.78365 5.88004 5.92652 6.11821 6.18425 6.39683 6.94644 7.05024 7.34474 7.39111 7.70086 7.93133 8.45602 8.78642 8.95748 9.61038 10.38993 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.005912 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.064437 B = 4735.039353 C = 4810.530279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.059 3.941 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.417 4.417 8 H 0.078 0.922 9 C 0.134 3.866 10 C -0.194 4.194 11 O -0.231 6.231 12 C 0.126 3.874 13 C 0.001 3.999 14 C -0.116 4.116 15 H 0.093 0.907 16 C -0.151 4.151 17 C 0.047 3.953 18 O -0.382 6.382 19 C 0.053 3.947 20 N -0.509 5.509 21 H 0.278 0.722 22 H 0.230 0.770 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -10.865 1.619 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.152 4.152 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.451 4.451 8 H 0.096 0.904 9 C 0.018 3.982 10 C -0.263 4.263 11 O -0.119 6.119 12 C -0.080 4.080 13 C -0.037 4.037 14 C -0.135 4.135 15 H 0.111 0.889 16 C -0.189 4.189 17 C -0.030 4.030 18 O -0.301 6.301 19 C -0.023 4.023 20 N -0.245 5.245 21 H 0.089 0.911 22 H 0.245 0.755 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.154 -10.891 1.829 11.045 hybrid contribution -0.256 1.122 -0.277 1.183 sum -0.101 -9.770 1.552 9.893 Atomic orbital electron populations 1.69283 1.07359 1.28536 1.41654 1.25666 0.94907 1.01123 0.93531 0.85938 0.79800 0.79791 0.78885 1.19718 1.20395 1.18860 1.18512 0.94273 0.87603 1.44752 0.90394 1.19388 0.90107 0.89915 0.98797 1.26648 0.99907 0.78748 1.21024 1.84090 1.34318 1.21453 1.71994 1.25224 0.80170 0.95823 1.06812 1.19661 1.03307 0.84875 0.95852 1.22757 0.98624 0.95421 0.96743 0.88908 1.22996 1.00893 0.95399 0.99599 1.23116 0.94153 0.89733 0.96008 1.88857 1.77095 1.27416 1.36759 1.23668 0.95981 0.92684 0.89962 1.70694 1.32189 1.00953 1.20698 0.91071 0.75468 0.90262 0.88737 0.90389 0.90298 0.92670 0.90198 0.88639 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.21 10.34 55.54 0.57 -21.64 16 2 C 0.06 1.55 5.49 -17.35 -0.10 1.46 16 3 Si 0.93 19.85 29.56 -169.99 -5.02 14.82 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.42 -11.94 9.49 -37.88 -0.36 -12.30 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.77 16 9 C 0.13 3.87 6.89 -84.54 -0.58 3.29 16 10 C -0.19 -5.35 11.18 30.94 0.35 -5.01 16 11 O -0.23 -5.77 10.72 6.04 0.06 -5.71 16 12 C 0.13 2.89 7.25 -13.09 -0.09 2.79 16 13 C 0.00 0.02 5.24 -27.88 -0.15 -0.12 16 14 C -0.12 -1.72 3.08 -88.61 -0.27 -2.00 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C -0.15 -1.68 6.60 -25.20 -0.17 -1.84 16 17 C 0.05 0.54 7.70 37.73 0.29 0.83 16 18 O -0.38 -5.87 11.52 -35.23 -0.41 -6.27 16 19 C 0.05 0.83 6.91 38.21 0.26 1.09 16 20 N -0.51 -13.61 11.36 -8.65 -0.10 -13.70 16 21 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 22 H 0.23 6.33 5.78 -52.49 -0.30 6.02 16 23 H 0.08 1.12 7.98 -51.93 -0.41 0.70 16 24 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.08 0.73 7.86 -51.93 -0.41 0.33 16 26 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -30.89 259.19 -5.42 -36.31 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.62 Total: 4.09 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.82 Total: -11.81 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.48 Total: -35.34 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.34 Total: -11.98 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.89 -5.42 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.211 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds