Wall clock time and date at job start Mon Mar 30 2020 03:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86798 * 120.00396 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00719 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00469 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00180 * 3 2 1 7 7 C 1.39735 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.41260 * 120.00195 * 359.72143 * 7 2 1 10 10 C 1.38792 * 126.67285 * 359.69023 * 9 7 2 11 11 O 1.34429 * 106.50122 * 179.84495 * 10 9 7 12 12 C 1.34052 * 108.38885 * 0.41906 * 11 10 9 13 13 C 1.50701 * 125.08094 * 179.73057 * 12 11 10 14 14 C 1.53004 * 109.46880 * 270.00257 * 13 12 11 15 15 H 1.08995 * 110.80448 * 308.62057 * 14 13 12 16 16 C 1.54813 * 110.90277 * 184.99733 * 14 13 12 17 17 C 1.54100 * 104.18690 * 220.92121 * 16 14 13 18 18 O 1.43741 * 107.29424 * 357.97151 * 17 16 14 19 19 C 1.44385 * 106.97445 * 26.51334 * 18 17 16 20 20 N 1.29910 * 109.84002 * 359.73068 * 12 11 10 21 21 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 22 22 H 1.07996 * 126.75305 * 0.02562 * 10 9 7 23 23 H 1.08998 * 109.46914 * 29.99994 * 13 12 11 24 24 H 1.09002 * 109.47501 * 150.00277 * 13 12 11 25 25 H 1.08999 * 110.48887 * 339.60190 * 16 14 13 26 26 H 1.09010 * 110.48561 * 102.24767 * 16 14 13 27 27 H 1.08999 * 109.88275 * 117.39908 * 17 16 14 28 28 H 1.09010 * 109.87776 * 238.39954 * 17 16 14 29 29 H 1.08997 * 110.61710 * 201.44004 * 19 18 17 30 30 H 1.09000 * 110.61842 * 78.44008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4914 2.0464 -1.4000 5 1 1.4414 2.6526 0.7002 6 1 3.5416 1.4400 0.7000 7 6 2.0085 -1.2102 -0.0005 8 1 3.0886 -1.2102 -0.0010 9 6 1.3022 -2.4335 0.0049 10 6 -0.0763 -2.5947 0.0170 11 8 -0.3058 -3.9193 0.0146 12 6 0.8754 -4.5532 0.0109 13 6 1.0554 -6.0494 0.0131 14 6 1.1223 -6.5528 1.4564 15 1 1.8589 -5.9894 2.0291 16 6 1.4318 -8.0691 1.4987 17 6 0.5156 -8.6107 2.6131 18 8 -0.1924 -7.4890 3.1669 19 6 -0.2718 -6.4871 2.1303 20 7 1.8417 -3.6849 0.0051 21 1 -0.4850 0.8400 0.0004 22 1 -0.8186 -1.8104 0.0238 23 1 0.2130 -6.5174 -0.4963 24 1 1.9803 -6.3049 -0.5041 25 1 1.1878 -8.5351 0.5440 26 1 2.4791 -8.2379 1.7500 27 1 -0.1925 -9.3265 2.1956 28 1 1.1160 -9.0910 3.3858 29 1 -0.4434 -5.5011 2.5619 30 1 -1.0560 -6.7360 1.4152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260877089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:34 Heat of formation + Delta-G solvation = -71.617428 kcal Electronic energy + Delta-G solvation = -14949.407258 eV Core-core repulsion = 12323.522349 eV Total energy + Delta-G solvation = -2625.884909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16193 -40.34758 -36.11063 -35.35803 -34.28612 -31.43485 -29.98191 -28.13959 -26.51995 -23.62906 -22.63241 -21.96789 -21.19045 -19.26128 -17.62540 -17.37997 -17.05940 -16.47090 -16.26016 -16.03180 -15.29082 -14.82718 -14.65940 -14.12929 -13.84574 -13.18448 -13.11569 -13.03595 -12.58168 -12.32574 -12.20447 -11.95797 -11.89035 -11.86160 -11.52663 -10.99959 -10.94429 -10.63947 -9.20769 -8.65656 -6.51381 1.13996 1.38618 1.40462 1.54494 2.17021 2.21233 2.52507 2.99715 3.33205 3.42897 3.78227 3.83796 3.97989 4.24761 4.29023 4.39007 4.59626 4.74837 4.79591 4.89283 4.89911 5.00814 5.13122 5.24704 5.34724 5.43699 5.63387 5.86650 5.90709 6.31864 6.71880 6.85417 7.56212 8.39940 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.005912 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.064437 B = 4735.039353 C = 4810.530279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.019 3.981 3 Si 1.008 2.992 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.070 0.930 9 C 0.104 3.896 10 C -0.229 4.229 11 O -0.234 6.234 12 C 0.153 3.847 13 C 0.003 3.997 14 C -0.114 4.114 15 H 0.065 0.935 16 C -0.138 4.138 17 C 0.039 3.961 18 O -0.406 6.406 19 C 0.053 3.947 20 N -0.546 5.546 21 H 0.290 0.710 22 H 0.222 0.778 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -11.957 1.239 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.088 0.912 9 C -0.010 4.010 10 C -0.298 4.298 11 O -0.122 6.122 12 C -0.055 4.055 13 C -0.035 4.035 14 C -0.134 4.134 15 H 0.084 0.916 16 C -0.175 4.175 17 C -0.037 4.037 18 O -0.325 6.325 19 C -0.023 4.023 20 N -0.282 5.282 21 H 0.101 0.899 22 H 0.237 0.763 23 H 0.130 0.870 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.592 -11.992 1.449 12.093 hybrid contribution -0.417 1.335 -0.131 1.405 sum 0.175 -10.657 1.318 10.739 Atomic orbital electron populations 1.69341 1.08690 1.30252 1.40175 1.26714 0.95893 1.04470 0.91959 0.84800 0.78288 0.74625 0.79453 1.18548 1.18682 1.18713 1.18819 0.94235 0.88971 1.47310 0.91153 1.19821 0.90997 0.91044 0.99137 1.26384 0.99416 0.79769 1.24197 1.84074 1.35083 1.20552 1.72477 1.26663 0.78877 0.98189 1.01735 1.20085 1.05736 0.80138 0.97549 1.22644 0.97596 0.98161 0.94976 0.91602 1.22979 1.01777 0.91793 1.00970 1.23413 0.94716 0.88846 0.96764 1.88833 1.77876 1.28474 1.37345 1.23580 0.96869 0.91680 0.90178 1.70703 1.33477 1.00888 1.23111 0.89892 0.76278 0.86957 0.86678 0.87628 0.88856 0.90522 0.88616 0.91836 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.03 10.34 21.80 0.23 -45.80 16 2 C 0.02 1.02 5.49 85.18 0.47 1.49 16 3 Si 1.01 40.45 29.56 68.60 2.03 42.48 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.46 -27.23 9.49 23.38 0.22 -27.01 16 8 H 0.07 4.10 7.84 -2.91 -0.02 4.08 16 9 C 0.10 6.29 6.89 39.33 0.27 6.56 16 10 C -0.23 -13.17 11.18 67.95 0.76 -12.41 16 11 O -0.23 -11.91 10.72 -1.31 -0.01 -11.93 16 12 C 0.15 7.05 7.25 88.39 0.64 7.69 16 13 C 0.00 0.08 5.24 29.85 0.16 0.24 16 14 C -0.11 -3.20 3.08 -9.49 -0.03 -3.23 16 15 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 16 C -0.14 -2.54 6.60 31.59 0.21 -2.33 16 17 C 0.04 0.76 7.70 72.35 0.56 1.32 16 18 O -0.41 -11.91 11.52 -148.98 -1.72 -13.63 16 19 C 0.05 1.62 6.91 72.66 0.50 2.12 16 20 N -0.55 -29.91 11.36 -296.19 -3.36 -33.28 16 21 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 22 H 0.22 12.80 5.78 -2.91 -0.02 12.79 16 23 H 0.11 2.74 7.98 -2.39 -0.02 2.72 16 24 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.11 1.42 7.86 -2.39 -0.02 1.40 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 Total: -1.00 -69.83 259.19 2.05 -67.77 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.14 Total: 19.94 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.76 Total: -25.56 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -3.14 Total: -79.08 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.73 Total: -25.55 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -69.83 2.05 -67.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.843 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds