Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86804 * 119.99745 * 2 1 4 4 H 1.48501 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47057 * 299.99847 * 3 2 1 6 6 H 1.48494 * 109.47277 * 60.00168 * 3 2 1 7 7 C 1.40164 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.39846 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.39416 * 126.87319 * 0.03558 * 9 7 2 11 11 N 1.33329 * 107.08324 * 179.71934 * 10 9 7 12 12 C 1.30801 * 109.25034 * 0.42217 * 11 10 9 13 13 C 1.50701 * 125.14984 * 179.82993 * 12 11 10 14 14 C 1.52997 * 109.47212 * 89.69520 * 13 12 11 15 15 H 1.09000 * 109.82544 * 305.57006 * 14 13 12 16 16 C 1.54379 * 109.83254 * 184.58779 * 14 13 12 17 17 C 1.55313 * 102.25252 * 219.12826 * 16 14 13 18 18 C 1.54953 * 100.93976 * 34.13279 * 17 16 14 19 19 O 1.43239 * 109.83027 * 66.44874 * 14 13 12 20 20 O 1.34010 * 109.69438 * 359.56251 * 12 11 10 21 21 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.46076 * 359.96945 * 10 9 7 23 23 H 1.09002 * 109.47060 * 209.69575 * 13 12 11 24 24 H 1.09001 * 109.47380 * 329.69663 * 13 12 11 25 25 H 1.08993 * 110.84821 * 337.31660 * 16 14 13 26 26 H 1.08994 * 110.84800 * 100.94120 * 16 14 13 27 27 H 1.08995 * 111.12270 * 276.21442 * 17 16 14 28 28 H 1.09003 * 111.15893 * 152.06598 * 17 16 14 29 29 H 1.09000 * 110.30802 * 204.63699 * 18 17 16 30 30 H 1.08996 * 110.30484 * 82.46929 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.7020 1.3465 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3965 1.2125 7 6 2.0088 -1.2139 -0.0005 8 1 3.0889 -1.2139 -0.0001 9 6 1.3096 -2.4250 -0.0005 10 6 -0.0745 -2.5918 -0.0007 11 7 -0.3108 -3.9040 -0.0069 12 6 0.8280 -4.5473 -0.0014 13 6 0.9774 -6.0469 -0.0019 14 6 1.0281 -6.5539 -1.4445 15 1 0.1546 -6.1994 -1.9918 16 6 1.0651 -8.0972 -1.4564 17 6 2.0614 -8.3942 -2.6102 18 6 3.0421 -7.2032 -2.4658 19 8 2.2230 -6.0873 -2.0819 20 8 1.8418 -3.6709 -0.0011 21 1 -0.4851 0.8401 0.0004 22 1 -0.8157 -1.8063 -0.0005 23 1 1.8990 -6.3204 0.5119 24 1 0.1278 -6.4969 0.5117 25 1 1.4420 -8.4834 -0.5094 26 1 0.0801 -8.5071 -1.6793 27 1 1.5594 -8.3746 -3.5774 28 1 2.5720 -9.3446 -2.4544 29 1 3.5349 -7.0014 -3.4169 30 1 3.7813 -7.4135 -1.6929 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906725.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = -49.736704 kcal Electronic energy + Delta-G solvation = -15029.328770 eV Core-core repulsion = 12404.392681 eV Total energy + Delta-G solvation = -2624.936090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85222 -39.10763 -34.00036 -32.86566 -32.05560 -31.57501 -28.72574 -26.63337 -23.88726 -21.71871 -20.96374 -20.63712 -19.21781 -17.48482 -16.66213 -15.80549 -15.44757 -14.68020 -14.53730 -13.96894 -13.46930 -13.38167 -12.80855 -12.51729 -11.96880 -11.62956 -11.53519 -11.38746 -11.28929 -10.95905 -10.74411 -10.68074 -10.50469 -10.17222 -9.57435 -9.40237 -9.14447 -8.60375 -7.17426 -6.82767 -4.43881 2.85250 3.02598 3.09885 3.44088 3.81867 4.10355 4.46360 4.59054 4.72063 4.92294 5.10544 5.22638 5.38608 5.40313 5.66611 5.76213 5.79239 5.83233 5.96180 5.99242 6.14501 6.32813 6.55091 6.97801 7.31382 7.41713 7.58655 7.72577 8.29642 8.46294 8.68971 8.80568 9.86699 10.13100 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.053564 B = 0.006436 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.609101 B = 4349.496489 C = 4682.992663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.068 3.932 3 Si 0.939 3.061 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.422 4.422 8 H 0.083 0.917 9 C 0.140 3.860 10 C -0.172 4.172 11 N -0.464 5.464 12 C 0.028 3.972 13 C -0.003 4.003 14 C 0.084 3.916 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.156 4.156 18 C 0.047 3.953 19 O -0.365 6.365 20 O -0.234 6.234 21 H 0.283 0.717 22 H 0.192 0.808 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -10.091 -2.770 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.150 4.150 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.087 3.913 10 C -0.318 4.318 11 N -0.193 5.193 12 C -0.171 4.171 13 C -0.041 4.041 14 C 0.026 3.974 15 H 0.101 0.899 16 C -0.188 4.188 17 C -0.194 4.194 18 C -0.030 4.030 19 O -0.284 6.284 20 O -0.125 6.125 21 H 0.095 0.905 22 H 0.208 0.792 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.585 -10.104 -2.801 10.799 hybrid contribution 0.918 0.906 0.016 1.290 sum 3.504 -9.198 -2.785 10.229 Atomic orbital electron populations 1.69604 1.07583 1.29207 1.35334 1.25832 0.95044 1.01310 0.92765 0.85751 0.80202 0.79105 0.78657 1.18333 1.19576 1.19588 1.18392 0.94817 0.86919 1.45177 0.89839 1.20732 0.92855 0.81863 0.95893 1.24117 0.95202 0.90669 1.21788 1.69559 1.27668 1.07569 1.14552 1.24346 0.81270 0.92645 1.18846 1.19840 1.02469 0.86081 0.95740 1.22891 0.88812 0.91880 0.93853 0.89940 1.23197 1.00475 0.95891 0.99255 1.23263 0.97604 0.99158 0.99375 1.23348 0.93801 0.86024 0.99798 1.88626 1.32015 1.29633 1.78113 1.84331 1.37518 1.16321 1.74338 0.90518 0.79168 0.90987 0.89050 0.90355 0.90033 0.90581 0.90297 0.90232 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.90 10.32 55.56 0.57 -20.33 16 2 C 0.07 1.75 5.50 -17.27 -0.09 1.65 16 3 Si 0.94 18.99 29.56 -169.99 -5.03 13.97 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.42 -11.98 9.45 -38.26 -0.36 -12.34 16 8 H 0.08 2.25 7.85 -52.48 -0.41 1.84 16 9 C 0.14 4.22 7.08 -38.54 -0.27 3.94 16 10 C -0.17 -5.17 10.89 -16.46 -0.18 -5.34 16 11 N -0.46 -13.14 11.23 -10.02 -0.11 -13.25 16 12 C 0.03 0.74 7.36 -12.72 -0.09 0.64 16 13 C 0.00 -0.05 5.42 -27.88 -0.15 -0.21 16 14 C 0.08 1.45 3.51 -26.01 -0.09 1.36 16 15 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.15 -1.81 6.54 -24.78 -0.16 -1.97 16 17 C -0.16 -1.69 7.16 -24.47 -0.18 -1.87 16 18 C 0.05 0.64 7.78 38.19 0.30 0.94 16 19 O -0.36 -7.05 10.82 -35.23 -0.38 -7.43 16 20 O -0.23 -6.81 10.81 3.12 0.03 -6.78 16 21 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 22 H 0.19 5.76 5.76 -52.48 -0.30 5.46 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 259.62 15.07 3.91 3.91 Total: -1.00 -32.73 259.62 -5.92 -38.65 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.64 Total: 4.46 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.28 Total: -13.19 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.46 Total: -33.58 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.35 Total: -14.22 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.73 -5.92 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906725.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.088 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds