Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30701 * 127.02029 * 2 1 4 4 O 1.21459 * 111.69325 * 180.02562 * 3 2 1 5 5 C 1.33161 * 111.27390 * 0.07394 * 4 3 2 6 6 C 1.35517 * 106.45967 * 359.86512 * 5 4 3 7 7 C 1.50081 * 124.86421 * 180.14835 * 6 5 4 8 8 O 1.42897 * 109.71161 * 256.47285 * 7 6 5 9 9 C 1.50703 * 109.70752 * 135.84363 * 7 6 5 10 10 H 1.07999 * 119.99977 * 354.72087 * 9 7 6 11 11 C 1.37874 * 119.99624 * 174.72531 * 9 7 6 12 12 N 1.31517 * 120.00243 * 4.94860 * 11 9 7 13 13 Si 1.86803 * 120.00015 * 184.94584 * 11 9 7 14 14 H 1.48507 * 109.46937 * 60.00012 * 13 11 9 15 15 H 1.48492 * 109.47345 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47152 * 300.00552 * 13 11 9 17 17 C 1.53545 * 108.22998 * 16.16039 * 7 6 5 18 18 C 1.53076 * 109.54374 * 310.75683 * 17 7 6 19 19 C 1.50561 * 129.73349 * 179.82917 * 5 4 3 20 20 H 1.09002 * 109.47365 * 274.91717 * 1 2 3 21 21 H 1.09004 * 109.47381 * 34.92248 * 1 2 3 22 22 H 1.09007 * 109.46925 * 154.91927 * 1 2 3 23 23 H 0.96701 * 114.00290 * 300.00170 * 8 7 6 24 24 H 0.97003 * 120.00204 * 174.99671 * 12 11 9 25 25 H 1.09000 * 109.45856 * 70.76266 * 17 7 6 26 26 H 1.08997 * 109.45971 * 190.72427 * 17 7 6 27 27 H 1.08999 * 109.41308 * 309.77782 * 18 17 7 28 28 H 1.08994 * 109.38867 * 189.92074 * 18 17 7 29 29 H 1.09002 * 109.69267 * 316.44466 * 19 5 4 30 30 H 1.09001 * 109.69438 * 77.03754 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0435 0.0000 4 8 3.4653 0.7225 -0.0005 5 6 3.6033 -0.6019 -0.0025 6 6 2.3504 -1.1185 -0.0002 7 6 2.0267 -2.5840 0.0019 8 8 1.6136 -2.9882 -1.3050 9 6 0.9245 -2.8595 0.9920 10 1 0.5576 -2.0661 1.6263 11 6 0.3846 -4.1245 1.0882 12 7 0.8958 -5.1128 0.3869 13 14 -1.0729 -4.4349 2.2146 14 1 -2.2164 -3.5882 1.7892 15 1 -1.4611 -5.8662 2.1389 16 1 -0.6996 -4.0970 3.6116 17 6 3.2914 -3.3547 0.4069 18 6 4.4781 -2.8661 -0.4274 19 6 4.8546 -1.4392 -0.0073 20 1 -0.3634 0.0881 1.0239 21 1 -0.3634 0.8426 -0.5883 22 1 -0.3633 -0.9308 -0.4357 23 1 0.8294 -2.5254 -1.6304 24 1 0.5640 -6.0161 0.5083 25 1 3.4968 -3.1855 1.4639 26 1 3.1389 -4.4198 0.2327 27 1 4.2063 -2.8734 -1.4830 28 1 5.3295 -3.5276 -0.2678 29 1 5.5714 -1.0245 -0.7160 30 1 5.2909 -1.4534 0.9915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260910955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -18.691024 kcal Electronic energy + Delta-G solvation = -16067.592141 eV Core-core repulsion = 13444.002294 eV Total energy + Delta-G solvation = -2623.589848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.75403 -39.28467 -35.89691 -35.23268 -34.21514 -31.47605 -30.32468 -29.46236 -27.01965 -24.38569 -23.40588 -21.68102 -20.07725 -18.96003 -18.38927 -18.10317 -16.60280 -16.52217 -15.38106 -15.07027 -14.78581 -14.64090 -14.20045 -13.86169 -13.71692 -13.42826 -13.09723 -13.04714 -12.81148 -12.39590 -12.09773 -12.05243 -11.75781 -11.54841 -10.98002 -10.69956 -10.51627 -10.18759 -9.89154 -8.02263 -6.25466 0.61026 1.39462 1.43711 1.46839 1.52005 2.23491 2.43744 3.19290 3.40135 3.76010 4.11072 4.16441 4.26472 4.30209 4.48682 4.67860 4.70011 4.78279 4.83620 4.88664 5.02703 5.13741 5.21210 5.37833 5.52948 5.66867 5.80959 5.96599 6.23798 6.76311 7.36279 7.38887 7.58095 8.97012 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.012664 C = 0.010005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.394388 B = 2210.465248 C = 2798.018372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.028 3.972 3 N -0.408 5.408 4 O 0.087 5.913 5 C -0.042 4.042 6 C -0.222 4.222 7 C 0.319 3.681 8 O -0.563 6.563 9 C -0.563 4.563 10 H 0.050 0.950 11 C 0.044 3.956 12 N -0.882 5.882 13 Si 0.941 3.059 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.093 4.093 18 C -0.112 4.112 19 C -0.025 4.025 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.353 0.647 24 H 0.259 0.741 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 5.072 -0.605 6.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.129 4.129 3 N -0.119 5.119 4 O 0.027 5.973 5 C -0.107 4.107 6 C -0.226 4.226 7 C 0.279 3.721 8 O -0.366 6.366 9 C -0.601 4.601 10 H 0.068 0.932 11 C -0.160 4.160 12 N -0.518 5.518 13 Si 0.767 3.233 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.131 4.131 18 C -0.149 4.149 19 C -0.063 4.063 20 H 0.095 0.905 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.197 0.803 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.724 5.804 -0.638 7.511 hybrid contribution -1.587 -0.730 0.687 1.877 sum 3.137 5.074 0.049 5.966 Atomic orbital electron populations 1.20150 0.84876 1.03722 1.03264 1.23492 0.99858 0.88628 1.00889 1.74080 0.89490 1.24315 1.23997 1.84564 1.21583 1.22847 1.68303 1.24828 0.99963 0.83159 1.02758 1.22187 0.92309 1.00377 1.07721 1.16958 0.92612 0.81079 0.81458 1.86495 1.48170 1.67495 1.34474 1.21655 1.20304 0.95857 1.22305 0.93168 1.25564 0.98502 0.96030 0.95889 1.70124 1.42280 0.99840 1.39568 0.85895 0.80835 0.77006 0.79521 1.19368 1.21222 1.20267 1.21458 0.92861 1.01291 0.97508 1.21649 0.98735 0.94608 0.99936 1.20391 0.89596 0.91455 1.04853 0.90499 0.89837 0.89862 0.80256 0.93135 0.93399 0.91733 0.92738 0.88706 0.86751 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.22 9.24 71.23 0.66 -1.56 16 2 C 0.03 1.16 7.14 43.17 0.31 1.46 16 3 N -0.41 -16.57 12.10 -48.61 -0.59 -17.16 16 4 O 0.09 3.34 11.20 78.90 0.88 4.22 16 5 C -0.04 -1.60 7.39 25.01 0.18 -1.41 16 6 C -0.22 -9.58 5.06 -20.24 -0.10 -9.69 16 7 C 0.32 15.11 0.66 -12.30 -0.01 15.10 16 8 O -0.56 -27.78 11.84 -148.98 -1.76 -29.55 16 9 C -0.56 -28.91 7.00 25.60 0.18 -28.74 16 10 H 0.05 2.60 6.97 -2.91 -0.02 2.58 16 11 C 0.04 2.28 5.27 84.65 0.45 2.72 16 12 N -0.88 -48.19 11.21 21.45 0.24 -47.95 16 13 Si 0.94 41.39 29.54 68.60 2.03 43.42 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 C -0.09 -4.14 4.62 30.80 0.14 -4.00 16 18 C -0.11 -3.78 5.87 30.76 0.18 -3.60 16 19 C -0.03 -0.73 6.31 29.95 0.19 -0.54 16 20 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 21 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 22 H 0.08 3.05 7.30 -2.38 -0.02 3.03 16 23 H 0.35 15.99 8.75 -74.06 -0.65 15.34 16 24 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 25 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 26 H 0.06 3.25 6.76 -2.39 -0.02 3.23 16 27 H 0.05 2.00 7.81 -2.39 -0.02 1.98 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -60.67 250.46 3.49 -57.19 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.51 Total: 20.07 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 2.18 Total: -30.24 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.35 Total: -65.11 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.88 Total: -25.32 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -60.67 3.49 -57.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.495 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds