Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30304 * 126.88824 * 2 1 4 4 O 1.21002 * 111.56193 * 180.02562 * 3 2 1 5 5 C 1.34140 * 111.52638 * 0.02562 * 4 3 2 6 6 C 1.35035 * 106.28517 * 359.96749 * 5 4 3 7 7 C 1.50672 * 110.64937 * 180.02562 * 6 5 4 8 8 O 1.42896 * 110.34342 * 135.53735 * 7 6 5 9 9 C 1.50702 * 110.34134 * 257.69088 * 7 6 5 10 10 H 1.08000 * 120.00265 * 24.50960 * 9 7 6 11 11 C 1.37873 * 119.99867 * 204.51612 * 9 7 6 12 12 N 1.31518 * 120.00180 * 170.69246 * 11 9 7 13 13 Si 1.86801 * 120.00185 * 350.69389 * 11 9 7 14 14 H 1.48500 * 109.47358 * 84.60977 * 13 11 9 15 15 H 1.48503 * 109.47355 * 204.61360 * 13 11 9 16 16 H 1.48504 * 109.46860 * 324.61195 * 13 11 9 17 17 C 1.54826 * 104.98037 * 16.66631 * 7 6 5 18 18 H 1.08999 * 111.01959 * 216.54315 * 17 7 6 19 19 C 1.52996 * 110.95560 * 92.79711 * 17 7 6 20 20 C 1.51100 * 143.60195 * 179.97438 * 5 4 3 21 21 H 1.08999 * 109.47145 * 85.33331 * 1 2 3 22 22 H 1.08996 * 109.47196 * 205.33525 * 1 2 3 23 23 H 1.09005 * 109.47410 * 325.33543 * 1 2 3 24 24 H 0.96709 * 113.99958 * 63.80464 * 8 7 6 25 25 H 0.96995 * 119.99847 * 179.97438 * 12 11 9 26 26 H 1.08999 * 109.47364 * 306.10714 * 19 17 7 27 27 H 1.09001 * 109.47130 * 66.10578 * 19 17 7 28 28 H 1.09006 * 109.47181 * 186.10525 * 19 17 7 29 29 H 1.09001 * 110.31739 * 282.16165 * 20 5 4 30 30 H 1.08998 * 110.32542 * 44.26052 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2892 1.0422 0.0000 4 8 3.4562 0.7224 -0.0005 5 6 3.6010 -0.6112 -0.0015 6 6 2.3534 -1.1276 -0.0008 7 6 2.4016 -2.6336 -0.0012 8 8 1.4624 -3.1610 0.9378 9 6 2.1164 -3.1665 -1.3817 10 1 2.3043 -2.5498 -2.2481 11 6 1.6156 -4.4414 -1.5385 12 7 1.1952 -4.8423 -2.7185 13 14 1.5340 -5.5996 -0.0751 14 1 0.2847 -5.3471 0.6870 15 1 1.5458 -7.0050 -0.5548 16 1 2.7067 -5.3673 0.8058 17 6 3.8468 -2.9878 0.4268 18 1 4.2080 -3.8672 -0.1063 19 6 3.9342 -3.1943 1.9402 20 6 4.6238 -1.7235 -0.0029 21 1 -0.3633 0.0836 -1.0242 22 1 -0.3633 -0.9288 0.4397 23 1 -0.3634 0.8453 0.5845 24 1 0.5401 -2.9614 0.7259 25 1 0.8432 -5.7393 -2.8289 26 1 3.5310 -2.3194 2.4502 27 1 3.3579 -4.0759 2.2205 28 1 4.9762 -3.3346 2.2282 29 1 5.0378 -1.8557 -1.0025 30 1 5.4194 -1.5072 0.7101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = 23.715113 kcal Electronic energy + Delta-G solvation = -16111.625108 eV Core-core repulsion = 13489.874129 eV Total energy + Delta-G solvation = -2621.750980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.30493 -38.48284 -34.46290 -33.82061 -32.35409 -30.42895 -28.30389 -27.40002 -26.34020 -23.59224 -21.23646 -19.77186 -19.16723 -17.55531 -16.91473 -16.48154 -15.18731 -14.99031 -13.83514 -13.47347 -13.33930 -12.94848 -12.90268 -12.64354 -12.24517 -11.97456 -11.83712 -11.53569 -11.07743 -11.02758 -10.63314 -10.45992 -10.28388 -10.05364 -9.51003 -9.18052 -8.78635 -8.61393 -8.18819 -6.23789 -4.35227 2.08657 2.91764 3.22327 3.41404 3.48594 3.63259 4.43308 4.77990 4.99431 5.05959 5.17935 5.27386 5.61958 5.69173 5.79651 5.89565 6.00271 6.03852 6.08009 6.23206 6.34221 6.39093 6.46479 6.69205 6.80600 6.87445 7.06038 7.41018 8.09366 8.59637 8.79895 8.85422 9.36416 10.85252 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.013292 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.378651 B = 2106.088191 C = 2437.998441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.041 3.959 3 N -0.382 5.382 4 O 0.099 5.901 5 C -0.077 4.077 6 C -0.199 4.199 7 C 0.300 3.700 8 O -0.559 6.559 9 C -0.552 4.552 10 H 0.077 0.923 11 C 0.077 3.923 12 N -0.885 5.885 13 Si 0.935 3.065 14 H -0.288 1.288 15 H -0.324 1.324 16 H -0.261 1.261 17 C -0.075 4.075 18 H 0.098 0.902 19 C -0.135 4.135 20 C -0.011 4.011 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.370 0.630 25 H 0.267 0.733 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 4.034 6.959 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 N -0.090 5.090 4 O 0.035 5.965 5 C -0.140 4.140 6 C -0.204 4.204 7 C 0.260 3.740 8 O -0.366 6.366 9 C -0.589 4.589 10 H 0.095 0.905 11 C -0.128 4.128 12 N -0.520 5.520 13 Si 0.769 3.231 14 H -0.216 1.216 15 H -0.255 1.255 16 H -0.186 1.186 17 C -0.094 4.094 18 H 0.116 0.884 19 C -0.192 4.192 20 C -0.049 4.049 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.218 0.782 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.168 5.016 7.116 9.265 hybrid contribution -0.746 -1.006 0.099 1.256 sum 2.422 4.010 7.215 8.603 Atomic orbital electron populations 1.20080 0.86504 1.02922 1.03056 1.22693 0.98292 0.88246 1.02394 1.73929 0.89057 1.23483 1.22554 1.84544 1.21520 1.21477 1.68921 1.25076 1.00580 0.83788 1.04593 1.22799 0.92434 1.00241 1.04891 1.18171 0.86326 0.80751 0.88758 1.86157 1.19346 1.77630 1.53449 1.21138 1.46497 1.00676 0.90629 0.90538 1.25067 0.92932 0.98042 0.96764 1.69972 1.39033 1.19136 1.23857 0.85941 0.79940 0.76242 0.80991 1.21571 1.25457 1.18639 1.22419 0.94602 0.96353 0.96060 0.88381 1.21704 0.99918 1.02315 0.95247 1.20736 0.94067 0.87093 1.02976 0.90359 0.90164 0.91465 0.78190 0.92328 0.93244 0.91622 0.93794 0.88790 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.48 36.01 0.38 -0.73 16 2 C 0.04 0.83 7.33 -82.20 -0.60 0.22 16 3 N -0.38 -7.78 12.08 33.41 0.40 -7.38 16 4 O 0.10 1.97 11.21 16.89 0.19 2.16 16 5 C -0.08 -1.51 8.39 -35.25 -0.30 -1.80 16 6 C -0.20 -4.23 6.05 -104.73 -0.63 -4.86 16 7 C 0.30 6.60 0.59 -91.97 -0.05 6.55 16 8 O -0.56 -11.87 7.57 -35.23 -0.27 -12.14 16 9 C -0.55 -14.46 8.67 -34.44 -0.30 -14.76 16 10 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 11 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 12 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 13 Si 0.94 22.07 24.49 -169.99 -4.16 17.91 16 14 H -0.29 -6.71 7.09 56.52 0.40 -6.31 16 15 H -0.32 -7.92 7.11 56.52 0.40 -7.52 16 16 H -0.26 -5.85 4.86 56.52 0.27 -5.58 16 17 C -0.08 -1.45 2.15 -88.88 -0.19 -1.65 16 18 H 0.10 1.96 7.44 -51.93 -0.39 1.58 16 19 C -0.13 -2.33 8.35 37.16 0.31 -2.02 16 20 C -0.01 -0.18 6.31 -26.90 -0.17 -0.35 16 21 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 22 H 0.08 1.21 7.55 -51.93 -0.39 0.82 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.37 7.23 8.27 45.56 0.38 7.61 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.21 6.46 -51.93 -0.34 0.88 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 LS Contribution 246.83 15.07 3.72 3.72 Total: -1.00 -30.06 246.83 -3.95 -34.00 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.95 Total: 4.05 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.66 Total: -17.40 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 1.18 Total: -32.29 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.16 Total: 17.91 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.06 -3.95 -34.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.718 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds