Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30304 * 126.88824 * 2 1 4 4 O 1.21002 * 111.56193 * 180.02562 * 3 2 1 5 5 C 1.34140 * 111.52638 * 0.02562 * 4 3 2 6 6 C 1.35035 * 106.28517 * 359.96749 * 5 4 3 7 7 C 1.50672 * 110.64937 * 180.02562 * 6 5 4 8 8 O 1.42896 * 110.34342 * 135.53735 * 7 6 5 9 9 C 1.50702 * 110.34134 * 257.69088 * 7 6 5 10 10 H 1.08000 * 120.00265 * 24.50960 * 9 7 6 11 11 C 1.37873 * 119.99867 * 204.51612 * 9 7 6 12 12 N 1.31518 * 120.00180 * 170.69246 * 11 9 7 13 13 Si 1.86801 * 120.00185 * 350.69389 * 11 9 7 14 14 H 1.48500 * 109.47358 * 84.60977 * 13 11 9 15 15 H 1.48503 * 109.47355 * 204.61360 * 13 11 9 16 16 H 1.48504 * 109.46860 * 324.61195 * 13 11 9 17 17 C 1.54826 * 104.98037 * 16.66631 * 7 6 5 18 18 H 1.08999 * 111.01959 * 216.54315 * 17 7 6 19 19 C 1.52996 * 110.95560 * 92.79711 * 17 7 6 20 20 C 1.51100 * 143.60195 * 179.97438 * 5 4 3 21 21 H 1.08999 * 109.47145 * 85.33331 * 1 2 3 22 22 H 1.08996 * 109.47196 * 205.33525 * 1 2 3 23 23 H 1.09005 * 109.47410 * 325.33543 * 1 2 3 24 24 H 0.96709 * 113.99958 * 63.80464 * 8 7 6 25 25 H 0.96995 * 119.99847 * 179.97438 * 12 11 9 26 26 H 1.08999 * 109.47364 * 306.10714 * 19 17 7 27 27 H 1.09001 * 109.47130 * 66.10578 * 19 17 7 28 28 H 1.09006 * 109.47181 * 186.10525 * 19 17 7 29 29 H 1.09001 * 110.31739 * 282.16165 * 20 5 4 30 30 H 1.08998 * 110.32542 * 44.26052 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2892 1.0422 0.0000 4 8 3.4562 0.7224 -0.0005 5 6 3.6010 -0.6112 -0.0015 6 6 2.3534 -1.1276 -0.0008 7 6 2.4016 -2.6336 -0.0012 8 8 1.4624 -3.1610 0.9378 9 6 2.1164 -3.1665 -1.3817 10 1 2.3043 -2.5498 -2.2481 11 6 1.6156 -4.4414 -1.5385 12 7 1.1952 -4.8423 -2.7185 13 14 1.5340 -5.5996 -0.0751 14 1 0.2847 -5.3471 0.6870 15 1 1.5458 -7.0050 -0.5548 16 1 2.7067 -5.3673 0.8058 17 6 3.8468 -2.9878 0.4268 18 1 4.2080 -3.8672 -0.1063 19 6 3.9342 -3.1943 1.9402 20 6 4.6238 -1.7235 -0.0029 21 1 -0.3633 0.0836 -1.0242 22 1 -0.3633 -0.9288 0.4397 23 1 -0.3634 0.8453 0.5845 24 1 0.5401 -2.9614 0.7259 25 1 0.8432 -5.7393 -2.8289 26 1 3.5310 -2.3194 2.4502 27 1 3.3579 -4.0759 2.2205 28 1 4.9762 -3.3346 2.2282 29 1 5.0378 -1.8557 -1.0025 30 1 5.4194 -1.5072 0.7101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957743.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = 2.476615 kcal Electronic energy + Delta-G solvation = -16112.546079 eV Core-core repulsion = 13489.874129 eV Total energy + Delta-G solvation = -2622.671950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.86075 -40.09864 -36.08556 -35.31717 -34.41830 -31.92052 -29.78673 -29.16607 -27.75424 -25.39768 -22.79897 -21.31637 -20.72393 -19.41778 -18.52501 -18.11737 -17.10534 -16.64512 -15.36343 -15.08587 -14.92078 -14.62536 -14.26038 -14.07078 -13.84410 -13.55791 -13.40081 -13.10706 -12.71816 -12.67573 -12.25031 -11.97727 -11.96535 -11.60254 -11.43130 -10.77332 -10.66389 -10.45069 -9.82178 -8.34056 -6.48000 0.54360 1.33043 1.53303 1.56193 1.69964 1.77120 2.45375 2.98546 3.33809 3.49831 3.62583 3.83420 4.13276 4.23904 4.34622 4.62831 4.64707 4.67635 4.77190 4.84035 4.91661 4.98843 5.06155 5.22114 5.32157 5.33650 5.48021 5.64853 6.05145 6.57286 6.92359 7.28192 7.31122 8.79201 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.013292 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.378651 B = 2106.088191 C = 2437.998441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.033 3.967 3 N -0.394 5.394 4 O 0.098 5.902 5 C -0.066 4.066 6 C -0.236 4.236 7 C 0.301 3.699 8 O -0.556 6.556 9 C -0.546 4.546 10 H 0.029 0.971 11 C 0.031 3.969 12 N -0.936 5.936 13 Si 0.993 3.007 14 H -0.280 1.280 15 H -0.336 1.336 16 H -0.239 1.239 17 C -0.079 4.079 18 H 0.090 0.910 19 C -0.127 4.127 20 C -0.007 4.007 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.376 0.624 25 H 0.268 0.732 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 4.192 9.089 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 N -0.104 5.104 4 O 0.036 5.964 5 C -0.130 4.130 6 C -0.240 4.240 7 C 0.261 3.739 8 O -0.364 6.364 9 C -0.584 4.584 10 H 0.047 0.953 11 C -0.169 4.169 12 N -0.573 5.573 13 Si 0.824 3.176 14 H -0.207 1.207 15 H -0.269 1.269 16 H -0.163 1.163 17 C -0.098 4.098 18 H 0.108 0.892 19 C -0.184 4.184 20 C -0.045 4.045 21 H 0.097 0.903 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.224 0.776 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.125 5.203 9.263 11.396 hybrid contribution -1.050 -0.973 -0.643 1.569 sum 3.075 4.230 8.620 10.082 Atomic orbital electron populations 1.20224 0.84350 1.04496 1.03619 1.23256 0.99939 0.87819 1.01429 1.73914 0.89261 1.23743 1.23459 1.84528 1.21468 1.21507 1.68903 1.25573 1.01026 0.83857 1.02523 1.22883 0.93774 1.00088 1.07299 1.18071 0.88012 0.81272 0.86595 1.86127 1.19824 1.77591 1.52849 1.21274 1.45515 0.99891 0.91674 0.95305 1.25815 0.92624 0.99538 0.98932 1.70100 1.41295 1.19677 1.26252 0.85002 0.81037 0.73389 0.78139 1.20687 1.26872 1.16327 1.22398 0.92513 0.97107 0.97773 0.89213 1.21646 1.02094 1.01605 0.93103 1.20876 0.94164 0.84889 1.04601 0.90335 0.89246 0.89138 0.77555 0.92360 0.93418 0.92836 0.90203 0.88173 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 10.48 71.24 0.75 -1.42 16 2 C 0.03 1.29 7.33 43.46 0.32 1.61 16 3 N -0.39 -15.58 12.08 -49.48 -0.60 -16.18 16 4 O 0.10 3.73 11.21 70.58 0.79 4.52 16 5 C -0.07 -2.46 8.39 25.07 0.21 -2.25 16 6 C -0.24 -9.75 6.05 -19.94 -0.12 -9.87 16 7 C 0.30 12.86 0.59 -11.67 -0.01 12.86 16 8 O -0.56 -22.53 7.57 -148.98 -1.13 -23.66 16 9 C -0.55 -28.95 8.67 25.60 0.22 -28.72 16 10 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 11 C 0.03 1.68 5.45 84.65 0.46 2.14 16 12 N -0.94 -55.73 13.96 21.45 0.30 -55.43 16 13 Si 0.99 44.94 24.49 68.60 1.68 46.62 16 14 H -0.28 -12.21 7.09 99.48 0.70 -11.51 16 15 H -0.34 -15.92 7.11 99.48 0.71 -15.21 16 16 H -0.24 -9.89 4.86 99.48 0.48 -9.40 16 17 C -0.08 -2.83 2.15 -9.66 -0.02 -2.85 16 18 H 0.09 3.38 7.44 -2.39 -0.02 3.36 16 19 C -0.13 -3.89 8.35 71.98 0.60 -3.29 16 20 C -0.01 -0.23 6.31 30.48 0.19 -0.04 16 21 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.09 2.57 7.55 -2.39 -0.02 2.56 16 23 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 24 H 0.38 14.11 8.27 -74.05 -0.61 13.50 16 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.76 6.46 -2.39 -0.02 1.75 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.12 2.75 7.91 -2.39 -0.02 2.73 16 Total: -1.00 -65.07 246.83 3.97 -61.10 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.32 Total: 14.85 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 2.60 Total: -31.83 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.30 Total: -71.61 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.34 Total: -19.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.68 Total: 46.62 kcal Total: -65.07 3.97 -61.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957743.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.575 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds