Wall clock time and date at job start Mon Mar 30 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30303 * 126.89571 * 2 1 4 4 O 1.20993 * 111.57104 * 179.97438 * 3 2 1 5 5 C 1.34143 * 111.52354 * 359.97438 * 4 3 2 6 6 C 1.35038 * 106.28644 * 0.03147 * 5 4 3 7 7 C 1.50670 * 110.65292 * 179.97438 * 6 5 4 8 8 O 1.42891 * 110.34570 * 224.36615 * 7 6 5 9 9 C 1.50705 * 110.34120 * 102.21057 * 7 6 5 10 10 H 1.07999 * 119.99725 * 359.76937 * 9 7 6 11 11 C 1.37879 * 119.99980 * 179.76550 * 9 7 6 12 12 N 1.31513 * 120.00169 * 354.70793 * 11 9 7 13 13 Si 1.86800 * 119.99887 * 174.70617 * 11 9 7 14 14 H 1.48500 * 109.46985 * 90.00089 * 13 11 9 15 15 H 1.48505 * 109.46917 * 330.00064 * 13 11 9 16 16 H 1.48491 * 109.47307 * 210.00062 * 13 11 9 17 17 C 1.54572 * 104.96224 * 343.34289 * 7 6 5 18 18 H 1.08999 * 110.93346 * 143.47441 * 17 7 6 19 19 C 1.52994 * 110.93048 * 267.14896 * 17 7 6 20 20 C 1.51103 * 143.60290 * 180.02562 * 5 4 3 21 21 H 1.08997 * 109.47414 * 274.76845 * 1 2 3 22 22 H 1.09006 * 109.46634 * 34.76576 * 1 2 3 23 23 H 1.08994 * 109.47248 * 154.76190 * 1 2 3 24 24 H 0.96701 * 113.99920 * 292.89377 * 8 7 6 25 25 H 0.97009 * 119.99704 * 5.34662 * 12 11 9 26 26 H 1.08997 * 109.47271 * 60.00162 * 19 17 7 27 27 H 1.09002 * 109.46939 * 179.97438 * 19 17 7 28 28 H 1.08998 * 109.47559 * 299.99715 * 19 17 7 29 29 H 1.09002 * 110.31996 * 315.61651 * 20 5 4 30 30 H 1.08997 * 110.32311 * 77.72117 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2893 1.0421 0.0000 4 8 3.4562 0.7223 0.0005 5 6 3.6010 -0.6113 0.0015 6 6 2.3533 -1.1277 0.0008 7 6 2.4015 -2.6337 0.0012 8 8 1.4607 -3.1611 -0.9361 9 6 2.1187 -3.1665 1.3822 10 1 1.9241 -2.4829 2.1954 11 6 2.1083 -4.5267 1.6076 12 7 2.2416 -5.3613 0.6000 13 14 1.9051 -5.1842 3.3442 14 1 0.4615 -5.3758 3.6351 15 1 2.4804 -4.2147 4.3110 16 1 2.6117 -6.4844 3.4672 17 6 3.8444 -2.9869 -0.4259 18 1 4.2042 -3.8666 0.1077 19 6 3.9312 -3.1944 -1.9392 20 6 4.6237 -1.7236 0.0029 21 1 -0.3634 0.0854 1.0241 22 1 -0.3633 0.8443 -0.5860 23 1 -0.3633 -0.9295 -0.4381 24 1 0.5370 -3.0050 -0.6963 25 1 2.4246 -5.0216 -0.2901 26 1 3.6291 -2.2797 -2.4493 27 1 4.9568 -3.4413 -2.2138 28 1 3.2698 -4.0095 -2.2328 29 1 5.4182 -1.5083 -0.7117 30 1 5.0393 -1.8545 1.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:06 Heat of formation + Delta-G solvation = 15.092371 kcal Electronic energy + Delta-G solvation = -16088.835594 eV Core-core repulsion = 13466.710704 eV Total energy + Delta-G solvation = -2622.124890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.26771 -38.34561 -34.09518 -33.82240 -32.24013 -30.29774 -28.25831 -26.71861 -26.22249 -23.40709 -21.28740 -19.72205 -19.09153 -17.72024 -16.89564 -16.46751 -15.18843 -13.97942 -13.86834 -13.44179 -13.30364 -12.97126 -12.70238 -12.57260 -12.13149 -12.01108 -11.64626 -11.36193 -10.96914 -10.73033 -10.48637 -10.26096 -10.20633 -10.16503 -9.55100 -9.21325 -8.68255 -8.47362 -7.97488 -6.42692 -4.31295 2.11568 2.95935 3.27543 3.36179 3.39218 3.55181 4.41878 4.80160 5.11212 5.22949 5.29874 5.41087 5.70202 5.75619 5.86508 5.93512 6.02985 6.09816 6.14245 6.35400 6.39467 6.47116 6.53245 6.76688 6.94650 7.06359 7.28703 7.84280 8.25080 8.75742 8.87418 8.96322 9.51755 10.94533 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.012191 C = 0.010794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.160588 B = 2296.311691 C = 2593.352578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.035 3.965 3 N -0.384 5.384 4 O 0.098 5.902 5 C -0.080 4.080 6 C -0.199 4.199 7 C 0.313 3.687 8 O -0.568 6.568 9 C -0.633 4.633 10 H 0.051 0.949 11 C 0.039 3.961 12 N -0.889 5.889 13 Si 1.065 2.935 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.283 1.283 17 C -0.071 4.071 18 H 0.099 0.901 19 C -0.130 4.130 20 C -0.010 4.010 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.359 0.641 25 H 0.291 0.709 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 4.812 -1.448 5.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 N -0.092 5.092 4 O 0.034 5.966 5 C -0.144 4.144 6 C -0.203 4.203 7 C 0.273 3.727 8 O -0.372 6.372 9 C -0.670 4.670 10 H 0.069 0.931 11 C -0.170 4.170 12 N -0.525 5.525 13 Si 0.893 3.107 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.208 1.208 17 C -0.090 4.090 18 H 0.118 0.882 19 C -0.187 4.187 20 C -0.048 4.048 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.205 0.795 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.518 4.551 -0.909 4.883 hybrid contribution -0.464 1.094 -0.368 1.244 sum 1.054 5.644 -1.277 5.882 Atomic orbital electron populations 1.20060 0.86593 1.03022 1.02746 1.22720 0.98265 0.88422 1.02809 1.73906 0.89117 1.23564 1.22591 1.84528 1.21477 1.21636 1.68977 1.25123 1.00783 0.83621 1.04837 1.23008 0.92277 1.00762 1.04235 1.17827 0.86570 0.79430 0.88886 1.86376 1.17975 1.81649 1.51239 1.22217 1.56550 0.94585 0.93696 0.93092 1.25722 0.93203 0.93010 1.05075 1.70616 1.40802 1.38489 1.02557 0.83607 0.76952 0.75831 0.74269 1.21354 1.21474 1.20808 1.22168 0.94760 0.96179 0.95921 0.88248 1.21595 0.99959 1.01849 0.95331 1.20762 0.94061 0.87314 1.02676 0.90666 0.91492 0.90095 0.79482 0.89527 0.93814 0.94015 0.91352 0.90710 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.48 36.01 0.38 -0.73 16 2 C 0.04 0.73 7.33 -82.20 -0.60 0.13 16 3 N -0.38 -8.08 12.08 33.41 0.40 -7.67 16 4 O 0.10 2.03 11.21 16.88 0.19 2.22 16 5 C -0.08 -1.67 8.39 -35.25 -0.30 -1.97 16 6 C -0.20 -4.44 6.02 -104.73 -0.63 -5.07 16 7 C 0.31 7.35 0.60 -92.11 -0.05 7.29 16 8 O -0.57 -13.34 9.93 -35.23 -0.35 -13.69 16 9 C -0.63 -16.52 8.18 -34.44 -0.28 -16.80 16 10 H 0.05 1.39 7.77 -52.49 -0.41 0.98 16 11 C 0.04 1.04 4.98 -17.82 -0.09 0.95 16 12 N -0.89 -24.64 13.00 55.43 0.72 -23.92 16 13 Si 1.07 23.70 29.91 -169.99 -5.08 18.62 16 14 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.07 -1.52 2.24 -89.01 -0.20 -1.71 16 18 H 0.10 2.30 6.82 -51.93 -0.35 1.95 16 19 C -0.13 -2.49 8.58 37.15 0.32 -2.18 16 20 C -0.01 -0.18 6.32 -26.90 -0.17 -0.35 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 24 H 0.36 7.81 8.58 45.56 0.39 8.20 16 25 H 0.29 8.01 5.19 -40.82 -0.21 7.80 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.41 7.31 -51.93 -0.38 1.03 16 29 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16 30 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -29.26 252.52 -4.62 -33.88 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.68 Total: 7.20 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.63 Total: -20.43 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 1.12 Total: -31.60 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.16 Total: -11.47 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.08 Total: 18.62 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.26 -4.62 -33.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.971 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds