Wall clock time and date at job start Mon Mar 30 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30303 * 126.89571 * 2 1 4 4 O 1.20993 * 111.57104 * 179.97438 * 3 2 1 5 5 C 1.34143 * 111.52354 * 359.97438 * 4 3 2 6 6 C 1.35038 * 106.28644 * 0.03147 * 5 4 3 7 7 C 1.50670 * 110.65292 * 179.97438 * 6 5 4 8 8 O 1.42891 * 110.34570 * 224.36615 * 7 6 5 9 9 C 1.50705 * 110.34120 * 102.21057 * 7 6 5 10 10 H 1.07999 * 119.99725 * 359.76937 * 9 7 6 11 11 C 1.37879 * 119.99980 * 179.76550 * 9 7 6 12 12 N 1.31513 * 120.00169 * 354.70793 * 11 9 7 13 13 Si 1.86800 * 119.99887 * 174.70617 * 11 9 7 14 14 H 1.48500 * 109.46985 * 90.00089 * 13 11 9 15 15 H 1.48505 * 109.46917 * 330.00064 * 13 11 9 16 16 H 1.48491 * 109.47307 * 210.00062 * 13 11 9 17 17 C 1.54572 * 104.96224 * 343.34289 * 7 6 5 18 18 H 1.08999 * 110.93346 * 143.47441 * 17 7 6 19 19 C 1.52994 * 110.93048 * 267.14896 * 17 7 6 20 20 C 1.51103 * 143.60290 * 180.02562 * 5 4 3 21 21 H 1.08997 * 109.47414 * 274.76845 * 1 2 3 22 22 H 1.09006 * 109.46634 * 34.76576 * 1 2 3 23 23 H 1.08994 * 109.47248 * 154.76190 * 1 2 3 24 24 H 0.96701 * 113.99920 * 292.89377 * 8 7 6 25 25 H 0.97009 * 119.99704 * 5.34662 * 12 11 9 26 26 H 1.08997 * 109.47271 * 60.00162 * 19 17 7 27 27 H 1.09002 * 109.46939 * 179.97438 * 19 17 7 28 28 H 1.08998 * 109.47559 * 299.99715 * 19 17 7 29 29 H 1.09002 * 110.31996 * 315.61651 * 20 5 4 30 30 H 1.08997 * 110.32311 * 77.72117 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2893 1.0421 0.0000 4 8 3.4562 0.7223 0.0005 5 6 3.6010 -0.6113 0.0015 6 6 2.3533 -1.1277 0.0008 7 6 2.4015 -2.6337 0.0012 8 8 1.4607 -3.1611 -0.9361 9 6 2.1187 -3.1665 1.3822 10 1 1.9241 -2.4829 2.1954 11 6 2.1083 -4.5267 1.6076 12 7 2.2416 -5.3613 0.6000 13 14 1.9051 -5.1842 3.3442 14 1 0.4615 -5.3758 3.6351 15 1 2.4804 -4.2147 4.3110 16 1 2.6117 -6.4844 3.4672 17 6 3.8444 -2.9869 -0.4259 18 1 4.2042 -3.8666 0.1077 19 6 3.9312 -3.1944 -1.9392 20 6 4.6237 -1.7236 0.0029 21 1 -0.3634 0.0854 1.0241 22 1 -0.3633 0.8443 -0.5860 23 1 -0.3633 -0.9295 -0.4381 24 1 0.5370 -3.0050 -0.6963 25 1 2.4246 -5.0216 -0.2901 26 1 3.6291 -2.2797 -2.4493 27 1 4.9568 -3.4413 -2.2138 28 1 3.2698 -4.0095 -2.2328 29 1 5.4182 -1.5083 -0.7117 30 1 5.0393 -1.8545 1.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:06 Heat of formation + Delta-G solvation = -3.878112 kcal Electronic energy + Delta-G solvation = -16089.658216 eV Core-core repulsion = 13466.710704 eV Total energy + Delta-G solvation = -2622.947512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.89116 -40.06462 -35.85786 -35.39146 -34.21845 -31.91973 -29.72567 -28.52712 -27.79219 -25.28187 -22.94280 -21.35741 -20.74328 -19.60114 -18.55830 -18.17994 -16.94139 -15.75597 -15.56718 -15.05318 -14.97249 -14.38398 -14.30642 -14.13590 -13.85389 -13.57315 -13.28012 -12.94489 -12.67958 -12.38315 -12.12985 -12.07821 -11.94097 -11.81125 -11.27774 -10.83682 -10.56347 -10.34070 -9.76023 -8.49090 -6.39101 0.49410 1.30798 1.56768 1.61859 1.66462 1.80795 2.57337 3.18019 3.29694 3.59372 3.64786 3.84698 4.09829 4.20946 4.33882 4.57883 4.59448 4.62506 4.70914 4.79621 4.91140 4.94064 4.98102 5.19536 5.33801 5.38825 5.58721 5.90225 6.16608 6.69109 7.13491 7.25583 7.51044 8.87556 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.012191 C = 0.010794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.160588 B = 2296.311691 C = 2593.352578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.030 3.970 3 N -0.393 5.393 4 O 0.097 5.903 5 C -0.072 4.072 6 C -0.234 4.234 7 C 0.306 3.694 8 O -0.574 6.574 9 C -0.639 4.639 10 H 0.032 0.968 11 C 0.003 3.997 12 N -0.912 5.912 13 Si 1.106 2.894 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.074 4.074 18 H 0.077 0.923 19 C -0.120 4.120 20 C -0.006 4.006 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.362 0.638 25 H 0.284 0.716 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 5.347 -1.336 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.128 4.128 3 N -0.102 5.102 4 O 0.035 5.965 5 C -0.136 4.136 6 C -0.238 4.238 7 C 0.266 3.734 8 O -0.379 6.379 9 C -0.677 4.677 10 H 0.050 0.950 11 C -0.202 4.202 12 N -0.549 5.549 13 Si 0.929 3.071 14 H -0.204 1.204 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.093 4.093 18 H 0.095 0.905 19 C -0.177 4.177 20 C -0.043 4.043 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.208 0.792 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.989 5.103 -0.805 5.535 hybrid contribution -0.635 0.966 -0.417 1.229 sum 1.354 6.069 -1.222 6.337 Atomic orbital electron populations 1.20209 0.84121 1.04278 1.03838 1.23306 1.00056 0.87763 1.01669 1.73891 0.89231 1.23706 1.23383 1.84517 1.21527 1.21415 1.69016 1.25501 1.01062 0.83802 1.03196 1.23081 0.93681 1.00526 1.06496 1.17877 0.87583 0.80259 0.87714 1.86365 1.18364 1.81933 1.51263 1.22390 1.56233 0.94456 0.94624 0.94990 1.26802 0.92494 0.93531 1.07378 1.70705 1.42682 1.38777 1.02690 0.83063 0.77402 0.75530 0.71084 1.20422 1.20549 1.20603 1.22095 0.93604 0.96556 0.97032 0.90467 1.21492 1.01500 1.00974 0.93741 1.20834 0.94083 0.85112 1.04318 0.89713 0.89251 0.89663 0.79156 0.90327 0.93843 0.90745 0.93494 0.86806 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.12 10.48 71.24 0.75 -1.37 16 2 C 0.03 1.19 7.33 43.46 0.32 1.51 16 3 N -0.39 -15.98 12.08 -49.47 -0.60 -16.58 16 4 O 0.10 3.88 11.21 70.57 0.79 4.67 16 5 C -0.07 -2.88 8.39 25.08 0.21 -2.67 16 6 C -0.23 -10.25 6.02 -19.93 -0.12 -10.37 16 7 C 0.31 14.28 0.60 -11.76 -0.01 14.28 16 8 O -0.57 -27.14 9.93 -148.98 -1.48 -28.62 16 9 C -0.64 -33.43 8.18 25.60 0.21 -33.22 16 10 H 0.03 1.75 7.77 -2.91 -0.02 1.73 16 11 C 0.00 0.14 4.98 84.66 0.42 0.57 16 12 N -0.91 -50.76 13.00 21.45 0.28 -50.48 16 13 Si 1.11 47.41 29.91 68.60 2.05 49.46 16 14 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 C -0.07 -3.07 2.24 -9.75 -0.02 -3.09 16 18 H 0.08 3.56 6.82 -2.39 -0.02 3.54 16 19 C -0.12 -4.42 8.58 71.98 0.62 -3.80 16 20 C -0.01 -0.20 6.32 30.49 0.19 0.00 16 21 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 23 H 0.08 2.59 7.68 -2.39 -0.02 2.57 16 24 H 0.36 15.94 8.58 -74.06 -0.64 15.31 16 25 H 0.28 15.82 5.19 -92.70 -0.48 15.33 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.05 1.91 7.31 -2.39 -0.02 1.90 16 29 H 0.11 3.11 7.91 -2.39 -0.02 3.09 16 30 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -61.44 252.52 4.43 -57.02 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.81 Total: 22.70 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 2.57 Total: -38.18 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.32 Total: -67.05 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.69 Total: -23.94 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.05 Total: 49.46 kcal Total: -61.44 4.43 -57.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.139 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds