Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48504 * 109.47199 * 239.99437 * 3 2 1 5 5 H 1.48496 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46923 * 119.99897 * 3 2 1 7 7 C 1.40175 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.39841 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.39425 * 126.86974 * 359.97438 * 9 7 2 11 11 N 1.33333 * 107.07789 * 179.97438 * 10 9 7 12 12 C 1.30796 * 109.25775 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.15472 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47333 * 90.02484 * 13 12 11 15 15 H 1.08991 * 110.90877 * 51.41296 * 14 13 12 16 16 C 1.55304 * 110.84593 * 175.00054 * 14 13 12 17 17 C 1.54944 * 100.97800 * 152.30096 * 16 14 13 18 18 O 1.43693 * 105.11450 * 323.61333 * 17 16 14 19 19 C 1.43240 * 109.99409 * 24.36003 * 18 17 16 20 20 O 1.34010 * 109.69094 * 0.26569 * 12 11 10 21 21 H 0.97002 * 120.00355 * 0.02562 * 1 2 3 22 22 H 1.07996 * 126.46296 * 0.02562 * 10 9 7 23 23 H 1.09003 * 109.47002 * 330.02208 * 13 12 11 24 24 H 1.09008 * 109.46860 * 210.02544 * 13 12 11 25 25 H 1.09002 * 111.12488 * 270.24072 * 16 14 13 26 26 H 1.08995 * 111.12730 * 34.36067 * 16 14 13 27 27 H 1.08996 * 110.31114 * 82.48962 * 17 16 14 28 28 H 1.09004 * 110.31323 * 204.65778 * 17 16 14 29 29 H 1.09001 * 109.83319 * 238.81565 * 19 18 17 30 30 H 1.08998 * 109.90329 * 117.88243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6963 1.2126 7 6 2.0088 -1.2140 0.0005 8 1 3.0887 -1.2140 0.0010 9 6 1.3095 -2.4250 0.0016 10 6 -0.0747 -2.5918 0.0028 11 7 -0.3110 -3.9040 0.0030 12 6 0.8277 -4.5474 0.0015 13 6 0.9771 -6.0470 0.0006 14 6 1.0267 -6.5538 -1.4422 15 1 1.7718 -6.0079 -2.0207 16 6 1.3059 -8.0810 -1.4821 17 6 0.6184 -8.4718 -2.8146 18 8 -0.5519 -7.6415 -2.8900 19 6 -0.3636 -6.4573 -2.1064 20 8 1.8415 -3.6710 0.0061 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8158 -1.8062 0.0026 23 1 0.1278 -6.4970 0.5148 24 1 1.8991 -6.3206 0.5138 25 1 2.3763 -8.2839 -1.5181 26 1 0.8407 -8.5877 -0.6367 27 1 1.2808 -8.2686 -3.6559 28 1 0.3361 -9.5246 -2.8001 29 1 -1.1361 -6.3942 -1.3400 30 1 -0.4065 -5.5771 -2.7479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959279.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = -74.924857 kcal Electronic energy + Delta-G solvation = -14956.869435 eV Core-core repulsion = 12330.841105 eV Total energy + Delta-G solvation = -2626.028330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.05422 -40.34194 -36.10762 -35.28586 -34.46467 -31.52328 -30.44308 -28.41511 -25.86477 -23.36593 -22.84947 -22.03371 -21.09823 -19.64037 -17.69046 -17.52699 -17.14413 -16.50171 -16.29807 -15.67716 -15.23307 -15.05235 -14.10928 -14.04297 -13.95871 -13.35453 -13.20549 -13.02426 -12.57718 -12.48572 -12.27435 -12.03561 -11.72540 -11.70975 -11.56238 -11.39124 -10.81139 -10.50685 -9.39247 -8.81684 -6.62458 1.02649 1.36260 1.53687 1.62123 2.09541 2.37163 2.67448 2.96107 3.05662 3.53487 3.69242 3.92959 4.02002 4.28268 4.37631 4.53694 4.64284 4.72384 4.82972 4.88529 4.93804 4.97940 5.07422 5.17658 5.27205 5.41925 5.55249 6.03741 6.14946 6.31274 6.45800 6.63230 7.65998 8.16263 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060674 B = 0.005919 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.374481 B = 4729.663479 C = 4821.382863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.026 3.974 3 Si 1.023 2.977 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.455 4.455 8 H 0.091 0.909 9 C 0.112 3.888 10 C -0.213 4.213 11 N -0.476 5.476 12 C 0.030 3.970 13 C 0.020 3.980 14 C -0.114 4.114 15 H 0.071 0.929 16 C -0.136 4.136 17 C 0.042 3.958 18 O -0.409 6.409 19 C 0.065 3.935 20 O -0.257 6.257 21 H 0.298 0.702 22 H 0.179 0.821 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -8.687 -1.904 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.189 4.189 3 Si 0.840 3.160 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.109 0.891 9 C 0.060 3.940 10 C -0.356 4.356 11 N -0.204 5.204 12 C -0.171 4.171 13 C -0.018 4.018 14 C -0.133 4.133 15 H 0.090 0.910 16 C -0.174 4.174 17 C -0.034 4.034 18 O -0.330 6.330 19 C -0.011 4.011 20 O -0.150 6.150 21 H 0.110 0.890 22 H 0.195 0.805 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.471 -8.964 -2.013 9.821 hybrid contribution 0.738 1.405 0.057 1.588 sum 4.209 -7.559 -1.955 8.870 Atomic orbital electron populations 1.69633 1.09352 1.31485 1.33535 1.27073 0.95956 1.04803 0.91071 0.84651 0.78102 0.72802 0.80461 1.17892 1.18304 1.17764 1.18841 0.95509 0.87559 1.46529 0.89067 1.21179 0.93264 0.82637 0.96969 1.23988 0.95257 0.91417 1.24973 1.69535 1.28729 1.06936 1.15204 1.25947 0.80328 0.94988 1.15861 1.19718 1.04687 0.80734 0.96667 1.22673 0.96604 0.98208 0.95846 0.91040 1.23319 1.03507 0.91869 0.98676 1.23644 0.86490 0.95952 0.97285 1.88356 1.40164 1.33100 1.71346 1.22992 0.97474 0.86798 0.93855 1.84305 1.38609 1.16633 1.75457 0.89021 0.80482 0.88158 0.87977 0.87296 0.88511 0.91724 0.87320 0.91461 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.39 10.32 21.87 0.23 -42.17 16 2 C 0.03 1.31 5.50 85.32 0.47 1.78 16 3 Si 1.02 36.52 29.56 68.60 2.03 38.54 16 4 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 5 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 6 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 7 C -0.46 -25.15 9.45 23.13 0.22 -24.93 16 8 H 0.09 4.71 7.85 -2.91 -0.02 4.68 16 9 C 0.11 6.64 7.08 22.94 0.16 6.80 16 10 C -0.21 -12.77 10.89 84.75 0.92 -11.85 16 11 N -0.48 -26.28 11.23 -300.13 -3.37 -29.65 16 12 C 0.03 1.49 7.27 88.26 0.64 2.13 16 13 C 0.02 0.68 5.25 29.85 0.16 0.84 16 14 C -0.11 -3.48 2.96 -9.53 -0.03 -3.51 16 15 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 16 C -0.14 -2.79 6.61 32.05 0.21 -2.58 16 17 C 0.04 0.92 7.78 72.65 0.57 1.49 16 18 O -0.41 -13.09 11.36 -148.98 -1.69 -14.78 16 19 C 0.07 2.29 7.13 72.45 0.52 2.81 16 20 O -0.26 -14.22 10.81 -11.77 -0.13 -14.35 16 21 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 22 H 0.18 10.95 5.76 -2.91 -0.02 10.93 16 23 H 0.10 3.15 7.92 -2.39 -0.02 3.13 16 24 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.07 2.49 7.67 -2.39 -0.02 2.47 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.95 258.92 2.04 -65.91 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.14 Total: 23.51 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.84 Total: -27.02 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -3.14 Total: -71.82 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.82 Total: -29.13 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.54 kcal Total: -67.95 2.04 -65.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959279.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.011 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds