Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86801 * 120.00503 * 2 1 4 4 H 1.48499 * 109.47082 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46831 * 29.99786 * 3 2 1 6 6 H 1.48494 * 109.47461 * 149.99762 * 3 2 1 7 7 C 1.40171 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00048 * 344.48535 * 7 2 1 9 9 C 1.39844 * 120.00008 * 164.48613 * 7 2 1 10 10 C 1.39414 * 126.87565 * 340.10069 * 9 7 2 11 11 N 1.33333 * 107.08564 * 179.87268 * 10 9 7 12 12 C 1.30799 * 109.25186 * 0.40463 * 11 10 9 13 13 C 1.50698 * 125.15139 * 179.74617 * 12 11 10 14 14 C 1.52995 * 109.47378 * 89.99880 * 13 12 11 15 15 H 1.09001 * 110.80378 * 308.62468 * 14 13 12 16 16 C 1.54807 * 110.90751 * 184.99677 * 14 13 12 17 17 C 1.54106 * 104.18954 * 220.91744 * 16 14 13 18 18 O 1.43748 * 107.29302 * 357.97636 * 17 16 14 19 19 C 1.44382 * 106.97413 * 26.50605 * 18 17 16 20 20 O 1.34019 * 109.69334 * 359.74003 * 12 11 10 21 21 H 0.96996 * 119.99722 * 179.05014 * 1 2 3 22 22 H 1.08007 * 126.45893 * 0.03110 * 10 9 7 23 23 H 1.09004 * 109.46428 * 209.99751 * 13 12 11 24 24 H 1.08998 * 109.47003 * 329.99306 * 13 12 11 25 25 H 1.08995 * 110.49092 * 339.59791 * 16 14 13 26 26 H 1.09001 * 110.48666 * 102.24687 * 16 14 13 27 27 H 1.09003 * 109.87459 * 117.39189 * 17 16 14 28 28 H 1.08994 * 109.88214 * 238.39343 * 17 16 14 29 29 H 1.08997 * 110.61610 * 201.43981 * 19 18 17 30 30 H 1.09004 * 110.61549 * 78.44765 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5396 1.4401 0.7000 7 6 2.0088 -1.2139 -0.0005 8 1 1.4983 -2.1323 0.2492 9 6 3.3690 -1.2359 -0.3245 10 6 4.0783 -0.2604 -1.0238 11 7 5.3415 -0.6789 -1.1074 12 6 5.4506 -1.8413 -0.5176 13 6 6.7224 -2.6421 -0.4070 14 6 7.4604 -2.2527 0.8754 15 1 7.5781 -1.1710 0.9410 16 6 8.8327 -2.9639 0.9607 17 6 8.9501 -3.3822 2.4393 18 8 7.7762 -2.9000 3.1143 19 6 6.7291 -2.8071 2.1245 20 8 4.2600 -2.2122 -0.0267 21 1 -0.4849 -0.8399 -0.0139 22 1 3.6802 0.6618 -1.4207 23 1 6.4813 -3.7048 -0.3790 24 1 7.3575 -2.4362 -1.2685 25 1 8.8489 -3.8409 0.3137 26 1 9.6358 -2.2769 0.6938 27 1 9.0007 -4.4685 2.5142 28 1 9.8427 -2.9385 2.8803 29 1 5.9516 -2.1169 2.4520 30 1 6.3081 -3.7910 1.9177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959280.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = -54.911015 kcal Electronic energy + Delta-G solvation = -15099.749450 eV Core-core repulsion = 12474.588986 eV Total energy + Delta-G solvation = -2625.160464 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37833 -39.21442 -34.30268 -33.77238 -32.97917 -30.41374 -29.20965 -26.86490 -23.67121 -22.48276 -21.40943 -20.52979 -19.50963 -18.43152 -16.67369 -15.91020 -15.56771 -14.99656 -14.80182 -14.08348 -13.84871 -13.52788 -13.46430 -12.82378 -12.71855 -11.93904 -11.57460 -11.45138 -11.26501 -10.94915 -10.68506 -10.47475 -10.26680 -9.99032 -9.62785 -9.56214 -9.40578 -9.04889 -7.76049 -7.53683 -4.80291 2.75323 3.15666 3.33000 3.50005 3.89501 3.93045 4.09592 4.25805 4.65352 4.84377 4.89980 4.99640 5.23717 5.39860 5.46256 5.63528 5.74178 5.78763 5.91230 5.94166 6.11571 6.17248 6.41930 6.58476 6.76034 6.97398 7.23000 7.28167 7.85201 7.92047 8.03913 8.37478 9.31525 9.76158 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.045266 B = 0.007125 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.414167 B = 3928.970732 C = 4019.957878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.057 3.943 3 Si 1.074 2.926 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.159 3.841 10 C -0.241 4.241 11 N -0.438 5.438 12 C 0.031 3.969 13 C 0.016 3.984 14 C -0.116 4.116 15 H 0.090 0.910 16 C -0.152 4.152 17 C 0.047 3.953 18 O -0.383 6.383 19 C 0.054 3.946 20 O -0.236 6.236 21 H 0.290 0.710 22 H 0.155 0.845 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -4.167 1.926 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.165 4.165 3 Si 0.899 3.101 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.105 3.895 10 C -0.384 4.384 11 N -0.166 5.166 12 C -0.170 4.170 13 C -0.022 4.022 14 C -0.136 4.136 15 H 0.109 0.891 16 C -0.189 4.189 17 C -0.030 4.030 18 O -0.302 6.302 19 C -0.022 4.022 20 O -0.127 6.127 21 H 0.102 0.898 22 H 0.172 0.828 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.791 -2.296 1.909 12.163 hybrid contribution -0.677 -2.168 -0.048 2.272 sum 11.114 -4.465 1.860 12.121 Atomic orbital electron populations 1.70583 1.07504 1.32928 1.30783 1.27199 0.95467 1.03957 0.89831 0.83596 0.75473 0.72508 0.78544 1.19799 1.21242 1.18368 1.19561 0.89843 0.97944 1.44464 0.89670 1.20804 0.90122 0.85345 0.93225 1.22825 0.90446 1.05936 1.19213 1.69342 1.21165 1.09281 1.16777 1.24587 0.87011 0.95628 1.09788 1.19415 0.88455 0.97138 0.97196 1.22804 0.93758 1.01670 0.95356 0.89145 1.22997 0.97932 1.01088 0.96926 1.23111 0.89458 0.98453 0.91991 1.88854 1.20711 1.87209 1.33435 1.23653 0.90639 1.00734 0.87189 1.84410 1.18340 1.45561 1.64420 0.89802 0.82788 0.90750 0.89310 0.90473 0.90422 0.92732 0.90253 0.88684 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 13.66 55.56 0.76 -19.89 16 2 C 0.06 1.49 5.51 -17.27 -0.10 1.39 16 3 Si 1.07 24.25 24.93 -169.99 -4.24 20.01 16 4 H -0.27 -5.86 6.63 56.52 0.37 -5.48 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -6.02 6.65 56.52 0.38 -5.64 16 7 C -0.49 -13.29 9.82 -38.26 -0.38 -13.67 16 8 H 0.09 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.16 4.30 6.62 -38.54 -0.26 4.04 16 10 C -0.24 -6.34 9.30 -16.46 -0.15 -6.49 16 11 N -0.44 -11.01 11.23 -10.02 -0.11 -11.12 16 12 C 0.03 0.70 7.28 -12.72 -0.09 0.60 16 13 C 0.02 0.27 5.24 -27.89 -0.15 0.12 16 14 C -0.12 -1.76 3.08 -88.62 -0.27 -2.03 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.15 -1.72 6.60 -25.20 -0.17 -1.89 16 17 C 0.05 0.55 7.70 37.74 0.29 0.84 16 18 O -0.38 -6.04 11.52 -35.23 -0.41 -6.45 16 19 C 0.05 0.87 6.91 38.21 0.26 1.13 16 20 O -0.24 -6.01 10.81 3.07 0.03 -5.98 16 21 H 0.29 7.26 8.72 -40.82 -0.36 6.91 16 22 H 0.16 3.89 4.31 -52.48 -0.23 3.67 16 23 H 0.07 1.10 7.98 -51.93 -0.41 0.69 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 254.30 15.07 3.83 3.83 Total: -1.00 -29.39 254.30 -4.76 -34.15 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.62 Total: 1.38 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.00 Total: -15.94 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.65 Total: -31.01 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.37 Total: -12.43 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.24 Total: 20.01 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.39 -4.76 -34.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959280.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.764 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds