Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 N 1.29019 * 124.91472 * 239.72498 * 12 2 1 14 14 C 1.31790 * 117.12257 * 179.81039 * 13 12 2 15 15 C 1.50703 * 122.74766 * 180.22124 * 14 13 12 16 16 C 1.53001 * 117.49583 * 214.03921 * 15 14 13 17 17 C 1.53001 * 117.49531 * 145.38171 * 15 14 13 18 18 C 1.33641 * 114.49903 * 0.47017 * 14 13 12 19 19 S 1.70979 * 124.91303 * 60.01988 * 12 2 1 20 20 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 21 21 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.08993 * 115.55294 * 359.71372 * 15 14 13 25 25 H 1.09001 * 117.49981 * 359.97438 * 16 15 14 26 26 H 1.09001 * 117.49856 * 145.02729 * 16 15 14 27 27 H 1.09003 * 117.49688 * 214.97907 * 17 15 14 28 28 H 1.08999 * 117.50009 * 359.97318 * 17 15 14 29 29 H 1.07997 * 126.03553 * 179.78785 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 7 2.7814 -0.1784 2.1362 14 6 3.1286 -0.9415 3.1531 15 6 3.9951 -0.4489 4.2834 16 6 4.9577 -1.4509 4.9240 17 6 3.7088 -0.9962 5.6832 18 6 2.6536 -2.1894 3.0971 19 16 1.6981 -2.3403 1.6244 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7011 1.1560 -3.4844 24 1 4.3251 0.5870 4.2059 25 1 4.9640 -2.4665 4.5281 26 1 5.9209 -1.0741 5.2682 27 1 3.8508 -0.3203 6.5266 28 1 2.8934 -1.7121 5.7866 29 1 2.8247 -2.9676 3.8260 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = 55.814015 kcal Electronic energy + Delta-G solvation = -12726.891725 eV Core-core repulsion = 10549.285530 eV Total energy + Delta-G solvation = -2177.606196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46438 -36.63169 -34.31955 -31.12692 -28.44256 -25.35613 -25.08676 -22.50108 -22.35227 -19.98589 -18.63937 -17.45128 -16.20076 -15.31717 -14.99790 -14.41786 -13.81621 -13.60179 -12.90899 -12.30413 -12.08763 -11.63966 -11.53482 -11.03824 -10.97774 -10.66390 -10.64719 -10.47169 -10.31585 -10.27345 -10.02043 -9.23434 -8.80803 -8.58818 -8.44751 -7.85218 -6.12200 -4.20620 1.47404 2.16094 2.60739 3.27851 3.29788 3.32448 3.37254 4.17493 4.33884 4.49373 4.95641 5.12328 5.19631 5.40208 5.51244 5.61333 5.77813 5.90568 6.10381 6.11139 6.41381 6.69834 6.77983 6.93011 7.06683 7.53478 7.72124 7.92968 8.16472 8.59609 8.79923 9.44550 10.93920 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.045766 B = 0.007163 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.665947 B = 3907.975174 C = 3978.409746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.105 3.895 3 H 0.061 0.939 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.130 3.870 13 N -0.502 5.502 14 C 0.105 3.895 15 C -0.077 4.077 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.309 4.309 19 S 0.105 5.895 20 H 0.096 0.904 21 H 0.032 0.968 22 H 0.014 0.986 23 H 0.265 0.735 24 H 0.117 0.883 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -4.956 10.991 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.084 3.916 3 H 0.078 0.922 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.148 4.148 13 N -0.216 5.216 14 C -0.027 4.027 15 C -0.098 4.098 16 C -0.209 4.209 17 C -0.209 4.209 18 C -0.448 4.448 19 S 0.362 5.638 20 H 0.114 0.886 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.166 -5.108 10.292 11.692 hybrid contribution 0.911 -0.188 -0.126 0.939 sum 3.077 -5.295 10.166 11.868 Atomic orbital electron populations 1.21868 0.96400 0.99788 1.01265 1.17731 0.92995 0.96220 0.84699 0.92151 1.20985 1.32302 1.12856 0.89509 0.92215 1.24902 0.94700 0.94903 0.98964 1.69862 1.35917 1.22546 1.23979 0.86538 0.79338 0.79776 0.81755 1.19999 1.21060 1.20084 1.28246 0.94180 0.93702 0.98684 1.66186 1.15666 1.36902 1.02819 1.19292 0.99125 0.89599 0.94730 1.20358 1.00152 0.99086 0.90194 1.23061 0.94380 0.99649 1.03760 1.23058 0.99824 1.03734 0.94265 1.26443 1.11612 1.01875 1.04917 1.83884 1.48445 1.16307 1.15156 0.88564 0.94918 0.96642 0.92530 0.86485 0.88608 0.88421 0.88446 0.88635 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.86 37.16 0.33 -2.87 15 2 C 0.11 2.69 2.73 -92.92 -0.25 2.44 15 3 H 0.06 1.69 8.14 -51.93 -0.42 1.27 15 4 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 15 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 15 7 N -0.89 -24.51 11.31 55.43 0.63 -23.88 15 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 12 C 0.13 3.00 5.98 -13.46 -0.08 2.92 15 13 N -0.50 -11.37 10.53 -8.05 -0.08 -11.45 15 14 C 0.11 1.99 6.50 -84.22 -0.55 1.45 15 15 C -0.08 -1.16 6.32 -91.77 -0.58 -1.74 15 16 C -0.17 -2.01 9.96 -26.69 -0.27 -2.27 15 17 C -0.17 -1.98 9.97 -26.69 -0.27 -2.24 15 18 C -0.31 -5.38 9.91 29.12 0.29 -5.09 15 19 S 0.11 2.06 22.70 -107.50 -2.44 -0.39 15 20 H 0.10 2.47 6.06 -51.93 -0.31 2.15 15 21 H 0.03 0.73 7.93 -51.93 -0.41 0.32 15 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.12 1.76 8.14 -51.93 -0.42 1.34 15 25 H 0.10 1.12 7.60 -51.93 -0.39 0.72 15 26 H 0.10 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.10 1.08 7.66 -51.93 -0.40 0.69 15 29 H 0.16 2.27 7.56 -52.49 -0.40 1.87 15 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -28.41 262.91 -8.29 -36.70 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.57 Total: -0.84 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.76 Total: -19.95 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.54 Total: -35.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.44 Total: -0.39 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.41 -8.29 -36.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.509 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds