Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.50702 * 109.47046 * 120.00252 * 2 1 3 5 5 H 1.07999 * 119.99545 * 114.48632 * 4 2 1 6 6 C 1.37870 * 119.99983 * 294.47977 * 4 2 1 7 7 N 1.31516 * 119.99925 * 164.74811 * 6 4 2 8 8 Si 1.86798 * 120.00216 * 344.75727 * 6 4 2 9 9 H 1.48497 * 109.47437 * 269.99579 * 8 6 4 10 10 H 1.48497 * 109.47403 * 29.99542 * 8 6 4 11 11 H 1.48506 * 109.47233 * 149.99630 * 8 6 4 12 12 C 1.50707 * 109.46839 * 240.00202 * 2 1 3 13 13 N 1.29024 * 124.91311 * 119.99802 * 12 2 1 14 14 C 1.31781 * 117.11966 * 179.97438 * 13 12 2 15 15 C 1.50699 * 122.74888 * 179.97438 * 14 13 12 16 16 C 1.53000 * 117.49915 * 213.62228 * 15 14 13 17 17 C 1.53007 * 60.00198 * 252.50741 * 16 15 14 18 18 C 1.33640 * 114.50412 * 0.02562 * 14 13 12 19 19 S 1.70971 * 124.91371 * 299.69414 * 12 2 1 20 20 H 1.09005 * 109.47470 * 53.70331 * 1 2 3 21 21 H 1.08999 * 109.47384 * 173.70694 * 1 2 3 22 22 H 1.08999 * 109.46955 * 293.70868 * 1 2 3 23 23 H 0.97000 * 119.99970 * 354.90954 * 7 6 4 24 24 H 1.09000 * 115.55259 * 359.33394 * 15 14 13 25 25 H 1.09002 * 117.50089 * 0.02562 * 16 15 14 26 26 H 1.09003 * 117.50035 * 145.02314 * 16 15 14 27 27 H 1.08994 * 117.49627 * 252.51189 * 17 16 15 28 28 H 1.08995 * 117.51079 * 107.47724 * 17 16 15 29 29 H 1.08003 * 126.04047 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5778 -1.6376 1.1337 6 6 1.7956 -0.1769 2.4795 7 7 1.9575 -0.9191 3.5531 8 14 1.2448 1.6002 2.6469 9 1 2.4360 2.4781 2.7709 10 1 0.4642 1.9918 1.4459 11 1 0.3962 1.7434 3.8572 12 6 2.0323 -0.7104 -1.2306 13 7 2.7771 -0.1768 -2.1390 14 6 3.1285 -0.9413 -3.1532 15 6 3.9944 -0.4486 -4.2839 16 6 3.7271 -1.0184 -5.6784 17 6 4.9777 -1.4424 -4.9056 18 6 2.6531 -2.1891 -3.0975 19 16 1.7036 -2.3421 -1.6211 20 1 -0.3634 0.6084 -0.8283 21 1 -0.3634 -1.0214 -0.1126 22 1 -0.3633 0.4132 0.9409 23 1 2.1713 -1.8610 3.4638 24 1 4.3069 0.5935 -4.2171 25 1 2.9247 -1.7494 -5.7782 26 1 3.8636 -0.3511 -6.5295 27 1 5.9368 -1.0540 -5.2481 28 1 4.9985 -2.4525 -4.4965 29 1 2.8249 -2.9676 -3.8261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036842.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = 38.279718 kcal Electronic energy + Delta-G solvation = -12773.538705 eV Core-core repulsion = 10595.172164 eV Total energy + Delta-G solvation = -2178.366540 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00828 -37.92971 -36.27966 -33.57021 -30.24001 -27.01621 -26.59648 -24.06091 -23.25081 -21.52390 -20.43279 -19.43881 -18.73518 -16.82635 -16.32392 -15.76713 -15.48250 -15.17808 -14.70733 -14.23753 -13.85138 -13.59075 -13.21590 -12.89734 -12.44733 -12.40626 -12.15695 -11.95005 -11.64753 -11.45033 -11.38598 -11.07052 -10.60728 -10.50474 -10.24602 -9.45901 -8.75588 -6.43257 -0.15350 0.54504 0.96872 1.50866 1.54027 1.73732 1.79060 2.48682 3.01444 3.08334 3.12928 3.90840 3.93514 4.16023 4.25421 4.34108 4.48514 4.55323 4.74073 4.75357 4.84002 4.98017 5.11202 5.19829 5.23554 5.30113 5.44981 5.82132 5.99563 6.48466 6.92414 7.32682 8.60173 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.045271 B = 0.007625 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.348143 B = 3671.125148 C = 3833.354333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.047 0.953 4 C -0.598 4.598 5 H 0.026 0.974 6 C -0.008 4.008 7 N -0.931 5.931 8 Si 1.077 2.923 9 H -0.278 1.278 10 H -0.234 1.234 11 H -0.281 1.281 12 C 0.088 3.912 13 N -0.520 5.520 14 C 0.087 3.913 15 C -0.113 4.113 16 C -0.147 4.147 17 C -0.157 4.157 18 C -0.285 4.285 19 S 0.120 5.880 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.255 0.745 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -0.611 -16.951 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.054 3.946 3 H 0.065 0.935 4 C -0.636 4.636 5 H 0.044 0.956 6 C -0.207 4.207 7 N -0.566 5.566 8 Si 0.898 3.102 9 H -0.204 1.204 10 H -0.158 1.158 11 H -0.207 1.207 12 C -0.189 4.189 13 N -0.235 5.235 14 C -0.045 4.045 15 C -0.134 4.134 16 C -0.184 4.184 17 C -0.194 4.194 18 C -0.424 4.424 19 S 0.376 5.624 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.487 0.265 -15.301 15.311 hybrid contribution 1.212 -1.280 -1.085 2.069 sum 0.725 -1.015 -16.385 16.433 Atomic orbital electron populations 1.22154 0.94915 1.01115 1.01345 1.17919 0.94091 0.95669 0.86883 0.93482 1.22014 1.39999 1.09550 0.92062 0.95602 1.27099 0.93551 1.08704 0.91347 1.70935 1.46103 1.07854 1.31679 0.83723 0.77888 0.70954 0.77667 1.20446 1.15765 1.20667 1.27430 0.97120 0.95708 0.98654 1.66142 1.15104 1.38665 1.03570 1.19846 0.99764 0.89904 0.94946 1.20443 1.02253 0.99573 0.91179 1.23187 0.99618 1.03089 0.92514 1.23185 0.95104 0.98894 1.02247 1.26867 1.09518 1.02246 1.03771 1.83790 1.48961 1.13613 1.16082 0.92594 0.93186 0.92059 0.93562 0.87149 0.88005 0.86124 0.86402 0.88484 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.44 71.98 0.61 -5.11 15 2 C 0.08 3.71 2.28 -12.28 -0.03 3.68 15 3 H 0.05 2.32 6.78 -2.39 -0.02 2.30 15 4 C -0.60 -33.69 8.69 25.60 0.22 -33.46 15 5 H 0.03 1.60 7.92 -2.91 -0.02 1.58 15 6 C -0.01 -0.44 5.33 84.65 0.45 0.01 15 7 N -0.93 -57.39 13.70 21.44 0.29 -57.10 15 8 Si 1.08 48.97 26.17 68.60 1.80 50.76 15 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 10 H -0.23 -9.29 5.54 99.48 0.55 -8.74 15 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 12 C 0.09 3.98 5.98 88.52 0.53 4.51 15 13 N -0.52 -22.65 10.53 -179.40 -1.89 -24.54 15 14 C 0.09 3.07 6.50 41.52 0.27 3.34 15 15 C -0.11 -3.05 6.32 -11.54 -0.07 -3.12 15 16 C -0.15 -2.68 9.95 30.60 0.30 -2.38 15 17 C -0.16 -3.05 9.97 30.60 0.30 -2.74 15 18 C -0.29 -9.09 9.91 66.78 0.66 -8.43 15 19 S 0.12 4.55 22.49 -56.49 -1.27 3.28 15 20 H 0.06 2.03 8.14 -2.38 -0.02 2.02 15 21 H 0.05 2.02 7.73 -2.39 -0.02 2.00 15 22 H 0.06 2.54 5.06 -2.39 -0.01 2.53 15 23 H 0.26 15.96 8.73 -92.71 -0.81 15.16 15 24 H 0.11 3.07 8.14 -2.39 -0.02 3.05 15 25 H 0.10 1.76 7.59 -2.39 -0.02 1.74 15 26 H 0.12 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.12 1.84 8.14 -2.39 -0.02 1.82 15 28 H 0.10 1.88 7.67 -2.39 -0.02 1.86 15 29 H 0.20 4.70 7.56 -2.91 -0.02 4.68 15 Total: -1.00 -66.30 257.61 3.13 -63.18 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.95 Total: 8.12 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 3.25 Total: -43.71 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.60 Total: -81.63 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.80 Total: 50.76 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.27 Total: 3.28 kcal Total: -66.30 3.13 -63.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036842.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.455 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds